Variant report

Variant	rs16931062
Chromosome Location	chr11:15167722-15167723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12224525	1.00[AMR][1000 genomes]
rs55936803	1.00[AMR][1000 genomes]
rs56096924	1.00[AMR][1000 genomes]
rs56391143	1.00[AMR][1000 genomes]
rs56408200	1.00[AMR][1000 genomes]
rs58369322	1.00[AMR][1000 genomes]
rs59051679	1.00[AMR][1000 genomes]
rs59687152	1.00[AMR][1000 genomes]
rs61151260	1.00[AMR][1000 genomes]
rs7110702	1.00[AMR][1000 genomes]
rs7125544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530497	chr11:14641440-15200572	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv897009	chr11:15166201-15181614	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15161600-15172600	Weak transcription	Pancreas	Pancrea
2	chr11:15164800-15168000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:15165200-15167800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:15165200-15167800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:15165200-15168000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:15165200-15169400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:15166200-15168000	Enhancers	Fetal Intestine Large	intestine
8	chr11:15166200-15168400	Enhancers	Colonic Mucosa	Colon
9	chr11:15166400-15168200	Enhancers	Stomach Mucosa	stomach
10	chr11:15166400-15168800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:15166400-15170200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:15166400-15170200	Enhancers	Osteobl	bone
13	chr11:15166400-15170400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:15166600-15169000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:15166800-15167800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:15166800-15168000	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr11:15166800-15168400	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:15167000-15167800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr11:15167200-15168400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:15167200-15169000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:15167200-15169000	Enhancers	NHDF-Ad	bronchial
22	chr11:15167200-15182800	Weak transcription	Fetal Intestine Small	intestine
23	chr11:15167400-15168200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:15167400-15168800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:15167600-15168600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr11:15167600-15168800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:15167600-15170400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:15167600-15171400	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links