Variant report

Variant	rs55936803
Chromosome Location	chr11:15230009-15230010
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12224525	1.00[AMR][1000 genomes]
rs16931062	1.00[AMR][1000 genomes]
rs56096924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56391143	1.00[AMR][1000 genomes]
rs56408200	1.00[AMR][1000 genomes]
rs58369322	1.00[AMR][1000 genomes]
rs59051679	1.00[AMR][1000 genomes]
rs59687152	1.00[AMR][1000 genomes]
rs61151260	1.00[AMR][1000 genomes]
rs7110702	1.00[AMR][1000 genomes]
rs7125544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038154	chr11:14991411-15246500	Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv540950	chr11:14991411-15246500	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv897010	chr11:15219258-15279421	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15219200-15234600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:15222200-15244600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:15226800-15231600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:15227200-15230800	Enhancers	Liver	Liver
5	chr11:15228200-15230800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:15229200-15230200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:15229600-15233000	Weak transcription	Right Atrium	heart
8	chr11:15229800-15230200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:15229800-15230200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr11:15229800-15231200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:15230000-15230200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:15230000-15230400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr11:15230000-15230400	Enhancers	Colonic Mucosa	Colon
14	chr11:15230000-15230400	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links