Variant report

Variant	rs16931161
Chromosome Location	chr9:13943319-13943320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13896594..13899401-chr9:13941918..13943557,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10119786	0.81[AMR][1000 genomes]
rs10121355	0.81[AMR][1000 genomes]
rs10125360	0.86[ASN][1000 genomes]
rs12000837	1.00[CHB][hapmap]
rs12343093	0.86[ASN][1000 genomes]
rs12347210	0.80[AFR][1000 genomes]
rs61012119	0.86[ASN][1000 genomes]
rs7021892	0.82[AMR][1000 genomes]
rs7849118	1.00[ASN][1000 genomes]
rs7865585	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv613636	chr9:13936438-13975480	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13933600-13961600	Weak transcription	Psoas Muscle	Psoas
2	chr9:13938400-13948000	Weak transcription	Right Ventricle	heart
3	chr9:13939600-13944000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:13939600-13944200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:13939800-13956200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:13940400-13962000	Weak transcription	Left Ventricle	heart
7	chr9:13940600-13943400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr9:13941000-13943400	Enhancers	HSMM	muscle
9	chr9:13941200-13943400	Enhancers	NHDF-Ad	bronchial
10	chr9:13941800-13943400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr9:13941800-13943600	Enhancers	HMEC	breast
12	chr9:13941800-13943600	Enhancers	NH-A	brain
13	chr9:13942200-13943600	Enhancers	NHEK	skin
14	chr9:13942200-13943600	Enhancers	NHLF	lung
15	chr9:13942200-13943800	Enhancers	HUVEC	blood vessel
16	chr9:13942200-13944400	Enhancers	Hela-S3	cervix
17	chr9:13942200-13944600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:13942400-13944200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:13942600-13943600	Enhancers	Osteobl	bone
20	chr9:13942600-13944200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:13942800-13943600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr9:13943000-13943600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:13943000-13947200	Weak transcription	Fetal Lung	lung
24	chr9:13943200-13944400	Weak transcription	Aorta	Aorta

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