Variant report

Variant	rs7849118
Chromosome Location	chr9:13933348-13933349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10125360	0.86[ASN][1000 genomes]
rs12343093	0.86[ASN][1000 genomes]
rs16931161	1.00[ASN][1000 genomes]
rs61012119	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022001	chr9:13717736-13983738	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv613635	chr9:13893246-13961462	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1015319	chr9:13931836-13970419	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13924200-13938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:13931600-13935800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:13932000-13933600	Enhancers	Adipose Nuclei	Adipose
4	chr9:13932400-13933600	Enhancers	Fetal Muscle Leg	muscle
5	chr9:13932600-13933600	Enhancers	Fetal Heart	heart
6	chr9:13932600-13933600	Enhancers	Left Ventricle	heart
7	chr9:13932600-13933600	Enhancers	Right Atrium	heart
8	chr9:13932600-13933600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr9:13932800-13933600	Enhancers	Psoas Muscle	Psoas
10	chr9:13933000-13933400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:13933000-13933600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr9:13933000-13937400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:13933000-13937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:13933200-13937000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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