Variant report
| Variant | rs16931253 |
|---|---|
| Chromosome Location | chr8:65385358-65385359 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10098515 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10504377 | 0.96[EUR][1000 genomes] |
| rs1376773 | 0.92[ASN][1000 genomes] |
| rs16931257 | 0.96[EUR][1000 genomes] |
| rs16931273 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1823667 | 0.94[ASN][1000 genomes] |
| rs192721 | 0.84[CHB][hapmap] |
| rs2218045 | 0.94[ASN][1000 genomes] |
| rs2246411 | 0.85[ASN][1000 genomes] |
| rs2577894 | 0.94[ASN][1000 genomes] |
| rs2577897 | 0.90[ASN][1000 genomes] |
| rs2600466 | 0.94[ASN][1000 genomes] |
| rs2600467 | 0.85[ASN][1000 genomes] |
| rs2600470 | 0.90[ASN][1000 genomes] |
| rs2600471 | 0.86[ASN][1000 genomes] |
| rs2600472 | 0.86[ASN][1000 genomes] |
| rs2612589 | 0.94[ASN][1000 genomes] |
| rs2612590 | 0.94[ASN][1000 genomes] |
| rs2612600 | 0.86[ASN][1000 genomes] |
| rs2612603 | 0.92[ASN][1000 genomes] |
| rs28703225 | 0.96[EUR][1000 genomes] |
| rs298210 | 0.84[CHB][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap] |
| rs298213 | 0.84[CHB][hapmap] |
| rs3110288 | 0.93[ASN][1000 genomes] |
| rs3110289 | 0.85[ASN][1000 genomes] |
| rs3779871 | 1.00[MKK][hapmap] |
| rs59712423 | 0.86[ASN][1000 genomes] |
| rs72656409 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72656411 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs921498 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534001 | chr8:64992196-65798776 | Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:65384400-65386600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr8:65384600-65386400 | Weak transcription | HMEC | breast |
