Variant report

Variant	rs3779871
Chromosome Location	chr8:65519300-65519301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10957322	0.87[GIH][hapmap]
rs11984829	0.84[GIH][hapmap]
rs11992601	0.87[GIH][hapmap]
rs11992694	0.84[GIH][hapmap]
rs11996540	0.87[GIH][hapmap]
rs12674544	1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682028	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258167	0.84[GIH][hapmap]
rs13272719	0.87[GIH][hapmap]
rs16931308	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs16931326	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes]
rs16931352	1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs16931374	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839878	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28391816	0.92[EUR][1000 genomes]
rs2884073	0.81[GIH][hapmap]
rs41333745	1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263804	1.00[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358837	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385495	0.84[GIH][hapmap]
rs4437695	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4480156	0.87[GIH][hapmap]
rs4521800	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543580	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737202	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737677	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737678	0.87[GIH][hapmap]
rs4737680	0.87[GIH][hapmap]
rs4737681	0.87[GIH][hapmap]
rs4737684	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55816857	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55852316	0.90[EUR][1000 genomes]
rs56136042	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345307	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378428	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682216	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822105	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57071798	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148757	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57198819	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57241952	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696702	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57948164	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58284770	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58303167	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58420338	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58451406	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58603842	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58668371	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58740344	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59556318	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59928224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60034994	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60347741	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551204	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078378	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981395	1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]
rs6997421	0.90[EUR][1000 genomes]
rs7009078	0.84[GIH][hapmap]
rs7012812	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237769	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237778	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244630	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688006	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688014	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688018	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688019	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688022	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688023	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688285	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688286	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688288	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688289	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688293	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688294	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688300	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688301	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689569	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689574	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689578	1.00[ASN][1000 genomes]
rs7812644	0.87[GIH][hapmap]
rs7826214	0.87[GIH][hapmap]
rs7831851	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918785	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918790	0.84[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv611449	chr8:65511032-65543401	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65500600-65526800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65503600-65538400	Weak transcription	Fetal Kidney	kidney
4	chr8:65505800-65521400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:65507400-65526400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:65507600-65520200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr8:65507800-65527200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:65510000-65525400	Weak transcription	Esophagus	oesophagus
9	chr8:65510400-65527400	Weak transcription	Adipose Nuclei	Adipose
10	chr8:65515600-65528200	Weak transcription	Brain Substantia Nigra	brain
11	chr8:65516600-65521800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:65516600-65522000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:65517200-65540000	Weak transcription	Fetal Stomach	stomach
14	chr8:65517200-65540200	Weak transcription	Fetal Lung	lung
15	chr8:65517400-65521400	Enhancers	Fetal Brain Male	brain
16	chr8:65517400-65535400	Weak transcription	Brain Anterior Caudate	brain
17	chr8:65517400-65540800	Weak transcription	Fetal Muscle Leg	muscle
18	chr8:65517600-65520400	Weak transcription	Spleen	Spleen
19	chr8:65518000-65521200	Enhancers	Fetal Brain Female	brain
20	chr8:65518200-65519400	Weak transcription	Brain Germinal Matrix	brain
21	chr8:65518200-65522400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:65518200-65522400	Weak transcription	NHEK	skin
23	chr8:65518200-65523400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:65518600-65519400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:65518800-65520400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr8:65519000-65525600	Weak transcription	Liver	Liver
27	chr8:65519000-65535200	Weak transcription	Ovary	ovary

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