Variant report

Variant	rs73688301
Chromosome Location	chr8:65754150-65754151
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12674544	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682028	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931326	0.83[EUR][1000 genomes]
rs16931374	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391816	0.97[EUR][1000 genomes]
rs3779871	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41333745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263804	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358837	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437695	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521800	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543580	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737202	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737677	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737684	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55816857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839813	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55852316	0.95[EUR][1000 genomes]
rs56136042	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378428	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682216	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822105	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57071798	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148757	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57198819	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57241952	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696702	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57948164	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58284770	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58303167	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58420338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58451406	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58603842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58668371	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58740344	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59556318	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59928224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60034994	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60347741	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551204	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237769	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237778	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244630	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688006	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688014	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688018	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688019	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688022	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688023	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688285	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688286	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688288	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688289	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688293	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688294	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688300	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689569	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689574	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689575	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689578	1.00[ASN][1000 genomes]
rs7831851	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918785	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65751000-65754200	Weak transcription	Right Atrium	heart
2	chr8:65753000-65757400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:65753800-65754200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:65753800-65754200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:65753800-65754400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:65754000-65754200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:65754000-65754200	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr8:65754000-65754200	Enhancers	Ovary	ovary
9	chr8:65754000-65754200	Flanking Active TSS	NHDF-Ad	bronchial
10	chr8:65754000-65754400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:65754000-65754400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr8:65754000-65754400	Active TSS	Fetal Muscle Trunk	muscle
13	chr8:65754000-65754400	Flanking Active TSS	NHEK	skin
14	chr8:65754000-65754600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:65754000-65754600	Enhancers	Fetal Lung	lung
16	chr8:65754000-65754600	Enhancers	GM12878-XiMat	blood
17	chr8:65754000-65754600	Active TSS	Osteobl	bone
18	chr8:65754000-65754800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr8:65754000-65754800	Enhancers	Brain Angular Gyrus	brain
20	chr8:65754000-65755600	Weak transcription	Fetal Muscle Leg	muscle

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