Variant report

Variant	rs73688022
Chromosome Location	chr8:65719869-65719870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:65719062..65720710-chr8:65721768..65724485,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs12674544	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931308	0.86[EUR][1000 genomes]
rs16931326	0.83[EUR][1000 genomes]
rs16931374	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1839878	0.83[EUR][1000 genomes]
rs28391816	0.97[EUR][1000 genomes]
rs3779871	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41333745	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263804	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358837	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437695	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521800	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543580	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737677	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55816857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839813	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55852316	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56136042	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378428	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822105	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57071798	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57198819	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57241952	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696702	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57948164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58284770	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58303167	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58420338	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58451406	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58603842	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58668371	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58740344	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59556318	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59928224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60034994	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60347741	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551204	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981395	0.86[EUR][1000 genomes]
rs6997421	0.86[EUR][1000 genomes]
rs7012812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237769	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237778	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244630	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688014	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688018	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688019	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688023	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688288	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688289	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688293	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688294	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688300	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688301	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689569	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689574	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689578	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7831851	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918785	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65711800-65720400	Weak transcription	Ovary	ovary
2	chr8:65712000-65720200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:65712000-65720400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:65715600-65720200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:65716000-65720600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:65717000-65720600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:65717200-65720000	Enhancers	Fetal Brain Female	brain
8	chr8:65717600-65720000	Enhancers	Fetal Brain Male	brain
9	chr8:65718000-65721200	Enhancers	Fetal Muscle Leg	muscle
10	chr8:65718200-65720600	Enhancers	Adipose Nuclei	Adipose
11	chr8:65718200-65720600	Enhancers	Brain Anterior Caudate	brain
12	chr8:65718400-65720000	Enhancers	Brain Germinal Matrix	brain
13	chr8:65718800-65720400	Enhancers	Fetal Lung	lung
14	chr8:65719600-65720200	Enhancers	Fetal Stomach	stomach
15	chr8:65719600-65720800	Enhancers	Aorta	Aorta
16	chr8:65719800-65723400	Weak transcription	Placenta Amnion	Placenta Amnion

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