Variant report

Variant	rs59556318
Chromosome Location	chr8:65543794-65543795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12674544	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682028	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16931308	0.81[EUR][1000 genomes]
rs16931374	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28391816	0.87[EUR][1000 genomes]
rs3779871	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41333745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4263804	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358837	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437695	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4521800	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4543580	1.00[ASN][1000 genomes]
rs4737202	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737677	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737684	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55816857	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55852316	0.95[EUR][1000 genomes]
rs56136042	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56378428	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56682216	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822105	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57071798	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57148757	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57198819	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57241952	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57696702	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57948164	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58284770	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58303167	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58420338	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58451406	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58603842	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58668371	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58740344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59928224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60034994	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60347741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60551204	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078378	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981395	0.81[EUR][1000 genomes]
rs6997421	0.81[EUR][1000 genomes]
rs7012812	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73237778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244630	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688006	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688014	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688018	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688019	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688022	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688023	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688285	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688286	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688288	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688289	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688293	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688294	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688300	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688301	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689569	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689574	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73689578	1.00[ASN][1000 genomes]
rs7831851	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918785	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv1847262	chr8:65509694-65595527	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv6231	chr8:65538593-65583623	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65499800-65553000	Weak transcription	Pancreas	Pancrea
2	chr8:65536200-65547600	Weak transcription	Liver	Liver
3	chr8:65542200-65543800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:65542200-65543800	Enhancers	HMEC	breast
5	chr8:65542400-65543800	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:65542400-65543800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:65543000-65543800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr8:65543200-65543800	Flanking Active TSS	GM12878-XiMat	blood
9	chr8:65543400-65547400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:65543600-65545200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:65543600-65545600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:65543600-65545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:65543600-65545600	Weak transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links