Variant report

Variant	rs10957322
Chromosome Location	chr8:65670364-65670365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10808739	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10808740	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10957323	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957324	0.91[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984829	1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap]
rs11992601	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992694	1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap]
rs11996540	0.92[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12156417	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12674544	0.93[GIH][hapmap];0.86[YRI][hapmap]
rs13258167	1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.80[EUR][1000 genomes]
rs13265280	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271746	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272719	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16931326	0.87[GIH][hapmap]
rs16931352	0.93[GIH][hapmap]
rs2356985	0.84[EUR][1000 genomes]
rs2356986	0.97[TSI][hapmap];0.84[EUR][1000 genomes]
rs2884073	0.87[CHD][hapmap];0.94[GIH][hapmap]
rs2884074	0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs28873972	0.80[EUR][1000 genomes]
rs34237366	0.80[EUR][1000 genomes]
rs34338127	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34520115	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34781030	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34782690	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34896430	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196908	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35328846	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35407243	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35926758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35928023	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779871	0.87[GIH][hapmap]
rs41333745	0.93[GIH][hapmap]
rs4134342	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4358837	0.93[GIH][hapmap]
rs4385495	1.00[CHD][hapmap];0.97[GIH][hapmap];0.88[MEX][hapmap]
rs4480156	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629907	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737199	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4737677	0.93[GIH][hapmap]
rs4737678	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4737680	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737681	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.97[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737683	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650602	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55666601	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55839813	0.91[AFR][1000 genomes]
rs55863909	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55873211	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56136042	0.87[AFR][1000 genomes]
rs57696702	0.93[AFR][1000 genomes]
rs57755888	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58195923	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58950093	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58994922	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61028788	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521118	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62521129	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62521148	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472153	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981395	0.87[GIH][hapmap]
rs6987861	0.95[TSI][hapmap];0.84[EUR][1000 genomes]
rs6995461	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997149	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009078	1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73688019	0.93[AFR][1000 genomes]
rs7812644	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814652	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821085	0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs7826214	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826501	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831851	0.87[GIH][hapmap]
rs9918790	1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65666600-65679400	Weak transcription	Pancreas	Pancrea
2	chr8:65667600-65671800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:65668400-65670400	Flanking Active TSS	GM12878-XiMat	blood
4	chr8:65668600-65670400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:65668600-65670400	Enhancers	NHEK	skin
6	chr8:65668800-65670400	Enhancers	Adipose Nuclei	Adipose
7	chr8:65669000-65670400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:65669000-65670400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:65669000-65670400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:65669600-65670400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:65669600-65670400	Enhancers	Ovary	ovary
12	chr8:65669600-65670600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:65669600-65670600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:65669600-65670600	Enhancers	Brain Hippocampus Middle	brain
15	chr8:65669600-65670600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr8:65669600-65670800	Enhancers	Brain Substantia Nigra	brain
17	chr8:65669600-65671000	Enhancers	Esophagus	oesophagus
18	chr8:65669800-65670400	Enhancers	NHDF-Ad	bronchial
19	chr8:65669800-65670600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:65669800-65670800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr8:65670000-65670400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:65670000-65670400	Enhancers	A549	lung
23	chr8:65670200-65670600	Enhancers	Spleen	Spleen
24	chr8:65670200-65670800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:65670200-65670800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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