Variant report

Variant	rs6472153
Chromosome Location	chr8:65679053-65679054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10808739	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10808740	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10957322	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957323	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957324	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11992601	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996540	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12156417	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13258167	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13265280	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13271746	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13272719	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13282180	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2356985	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2356986	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2884073	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2884074	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs28873972	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs34237366	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs34338127	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34484820	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs34520115	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700548	0.80[AMR][1000 genomes]
rs34781030	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34782690	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34896430	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196908	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35328846	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35407243	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35926758	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35928023	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4134342	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385495	0.80[AMR][1000 genomes]
rs4480156	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629907	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737199	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4737678	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4737680	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737681	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737683	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650602	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55666601	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55863909	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55873211	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345307	0.88[AFR][1000 genomes]
rs56822105	0.84[AFR][1000 genomes]
rs57755888	0.96[EUR][1000 genomes]
rs58195923	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58950093	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58994922	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61028788	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62521112	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs62521114	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62521118	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62521129	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62521148	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987861	0.83[EUR][1000 genomes]
rs6995461	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6997149	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009078	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs716283	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73688289	0.84[AFR][1000 genomes]
rs7812644	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814652	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821085	0.86[EUR][1000 genomes]
rs7826214	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7826501	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918790	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534001	chr8:64992196-65798776	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv2761434	chr8:65578467-66567678	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv981948	chr8:65675044-65680977	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:65666600-65679400	Weak transcription	Pancreas	Pancrea
2	chr8:65671600-65682200	Weak transcription	Esophagus	oesophagus
3	chr8:65678200-65679200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:65678400-65679400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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