Variant report

Variant	rs16931258
Chromosome Location	chr9:14027643-14027644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14022228..14025060-chr9:14026998..14028681,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16931256	0.85[AFR][1000 genomes]
rs16931261	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55977907	0.81[AMR][1000 genomes]
rs58624125	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7019371	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019738	0.85[AMR][1000 genomes]
rs7028654	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73648449	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14022800-14028200	Weak transcription	Hela-S3	cervix
2	chr9:14023200-14029400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:14025600-14029800	Weak transcription	Right Ventricle	heart
4	chr9:14026600-14027800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:14026600-14028400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:14026600-14029800	Enhancers	HUVEC	blood vessel
7	chr9:14026800-14027800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:14026800-14027800	Enhancers	Adipose Nuclei	Adipose
9	chr9:14026800-14028000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:14026800-14028400	Enhancers	Fetal Lung	lung
11	chr9:14026800-14028600	Enhancers	Liver	Liver
12	chr9:14026800-14028600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:14026800-14028800	Enhancers	Psoas Muscle	Psoas
14	chr9:14026800-14029000	Enhancers	Fetal Heart	heart
15	chr9:14027000-14027800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:14027000-14027800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:14027000-14027800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:14027000-14027800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr9:14027000-14027800	Enhancers	Aorta	Aorta
20	chr9:14027000-14027800	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr9:14027000-14027800	Enhancers	Right Atrium	heart
22	chr9:14027000-14027800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr9:14027000-14028000	Enhancers	Fetal Muscle Leg	muscle
24	chr9:14027000-14028000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr9:14027000-14028600	Enhancers	Fetal Intestine Small	intestine
26	chr9:14027000-14028800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr9:14027200-14028000	Enhancers	Fetal Stomach	stomach
28	chr9:14027200-14028200	Weak transcription	Fetal Kidney	kidney
29	chr9:14027400-14027800	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr9:14027400-14029800	Weak transcription	Stomach Mucosa	stomach
31	chr9:14027400-14030200	Weak transcription	Fetal Intestine Large	intestine
32	chr9:14027400-14030200	Weak transcription	Left Ventricle	heart
33	chr9:14027400-14030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr9:14027400-14032200	Weak transcription	Lung	lung
35	chr9:14027600-14027800	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr9:14027600-14027800	Enhancers	Pancreatic Islets	Pancreatic Islet
37	chr9:14027600-14028000	Enhancers	Duodenum Mucosa	Duodenum
38	chr9:14027600-14029800	Weak transcription	HSMM	muscle
39	chr9:14027600-14030800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:14027600-14030800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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