Variant report

Variant	rs55977907
Chromosome Location	chr9:14022023-14022024
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16931256	0.84[AMR][1000 genomes]
rs16931258	0.81[AMR][1000 genomes]
rs57993128	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58624125	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60805695	0.85[EUR][1000 genomes]
rs7028654	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73648449	0.90[EUR][1000 genomes]
rs7465962	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13994000-14027000	Weak transcription	Aorta	Aorta
2	chr9:14014000-14027000	Weak transcription	Right Atrium	heart
3	chr9:14015400-14027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:14020600-14026800	Weak transcription	Fetal Heart	heart
5	chr9:14021600-14022600	Enhancers	Fetal Lung	lung
6	chr9:14021600-14022600	Enhancers	HUVEC	blood vessel
7	chr9:14021600-14022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:14021800-14022200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:14021800-14022600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:14021800-14022800	Enhancers	Hela-S3	cervix
11	chr9:14021800-14023000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:14022000-14022200	Enhancers	HSMMtube	muscle
13	chr9:14022000-14022400	Enhancers	Psoas Muscle	Psoas
14	chr9:14022000-14022600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:14022000-14022600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:14022000-14022600	Enhancers	Left Ventricle	heart
17	chr9:14022000-14022600	Enhancers	HSMM	muscle
18	chr9:14022000-14022600	Enhancers	Osteobl	bone
19	chr9:14022000-14022800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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