Variant report

Variant	rs16932561
Chromosome Location	chr8:67058975-67058976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16932554	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472253	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73249952	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73249993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73693918	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834526	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67042600-67069200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:67051800-67059600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr8:67051800-67066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:67053400-67066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:67053800-67062800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:67053800-67066400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr8:67055600-67068800	Weak transcription	Right Atrium	heart
8	chr8:67055800-67064200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:67055800-67068800	Weak transcription	Right Ventricle	heart
10	chr8:67057800-67059200	Enhancers	Psoas Muscle	Psoas
11	chr8:67058000-67059400	Genic enhancers	HSMM	muscle
12	chr8:67058000-67060600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:67058200-67059600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:67058200-67059600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:67058200-67064200	Weak transcription	Left Ventricle	heart
16	chr8:67058600-67059000	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:67058600-67071400	Weak transcription	Liver	Liver
18	chr8:67058800-67059000	Enhancers	NH-A	brain
19	chr8:67058800-67059400	Enhancers	Fetal Heart	heart
20	chr8:67058800-67059400	Enhancers	NHDF-Ad	bronchial
21	chr8:67058800-67059600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:67058800-67059600	Enhancers	HSMMtube	muscle
23	chr8:67058800-67059600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links