Variant report

Variant	rs16933949
Chromosome Location	chr9:116224452-116224453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116222989..116229179-chr9:116341260..116348453,12	MCF-7	breast:
2	chr9:116223752..116229757-chr9:116340131..116348699,14	MCF-7	breast:
3	chr9:116223200..116229905-chr9:116240839..116245410,9	MCF-7	breast:
4	chr9:116223306..116225518-chr9:116227028..116228587,2	K562	blood:
5	chr9:116224389..116227414-chr9:116412116..116415236,3	MCF-7	breast:
6	chr9:116223306..116225779-chr9:116227028..116228587,3	K562	blood:
7	chr9:116171540..116174931-chr9:116223597..116227370,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138835	Chromatin interaction
ENSG00000157653	Chromatin interaction
ENSG00000227482	Chromatin interaction
ENSG00000148229	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16906786	1.00[MEX][hapmap]
rs61187134	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116216000-116225400	Weak transcription	Gastric	stomach
2	chr9:116217400-116225200	Weak transcription	Right Ventricle	heart
3	chr9:116217600-116225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:116218200-116225400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:116218600-116229200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:116218800-116224800	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:116218800-116225200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:116218800-116225200	Weak transcription	Small Intestine	intestine
9	chr9:116218800-116225400	Weak transcription	Pancreas	Pancrea
10	chr9:116218800-116225400	Weak transcription	Right Atrium	heart
11	chr9:116218800-116226000	Weak transcription	Fetal Kidney	kidney
12	chr9:116219000-116225400	Weak transcription	Fetal Intestine Large	intestine
13	chr9:116219400-116240000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:116219600-116225400	Weak transcription	Aorta	Aorta
15	chr9:116219800-116225000	Weak transcription	Placenta	Placenta
16	chr9:116222200-116225400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:116223200-116225600	Enhancers	Fetal Heart	heart
18	chr9:116223400-116226000	Strong transcription	Primary hematopoietic stem cells	blood
19	chr9:116223600-116225200	Enhancers	HepG2	liver
20	chr9:116223600-116226800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:116224200-116225800	Enhancers	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links