Variant report

Variant	rs61187134
Chromosome Location	chr9:116307757-116307758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:116302562..116304831-chr9:116305585..116308293,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16906786	0.87[AFR][1000 genomes]
rs16933949	1.00[AMR][1000 genomes]
rs60242747	0.85[AFR][1000 genomes]
rs73538886	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv893747	chr9:116214058-116386438	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv466508	chr9:116244982-116362738	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv615215	chr9:116244982-116362738	Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526579	chr9:116244982-116391162	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116287000-116311600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr9:116287400-116309200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:116288000-116308600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:116288800-116308200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:116288800-116308200	Strong transcription	HUVEC	blood vessel
6	chr9:116289000-116308400	Strong transcription	GM12878-XiMat	blood
7	chr9:116289600-116310000	Weak transcription	Fetal Kidney	kidney
8	chr9:116291000-116310600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:116291600-116310400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:116297600-116308400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:116298400-116309400	Strong transcription	Primary T cells from cord blood	blood
12	chr9:116298800-116310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:116299000-116310800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr9:116299400-116310600	Weak transcription	Thymus	Thymus
15	chr9:116299600-116308800	Weak transcription	Psoas Muscle	Psoas
16	chr9:116299600-116309200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr9:116299600-116310600	Weak transcription	NHLF	lung
18	chr9:116300400-116307800	Weak transcription	Dnd41	blood
19	chr9:116301600-116309200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr9:116302200-116308400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr9:116303200-116310800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:116303400-116308800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr9:116303400-116311800	Enhancers	Brain Angular Gyrus	brain
24	chr9:116303400-116312000	Enhancers	Brain Hippocampus Middle	brain
25	chr9:116304000-116308000	Strong transcription	Fetal Intestine Large	intestine
26	chr9:116304000-116310200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:116304000-116310600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:116304200-116309200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr9:116304200-116309600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:116304200-116310400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr9:116304400-116309600	Enhancers	Brain Substantia Nigra	brain
32	chr9:116304400-116310400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:116304400-116310600	Weak transcription	Esophagus	oesophagus
34	chr9:116304400-116323600	Weak transcription	Hela-S3	cervix
35	chr9:116304600-116308400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr9:116304600-116308800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:116304600-116309000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr9:116304600-116310600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:116304600-116321000	Weak transcription	A549	lung
40	chr9:116304800-116309800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr9:116305000-116307800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr9:116305000-116309200	Weak transcription	Small Intestine	intestine
43	chr9:116305600-116308600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:116305600-116309000	Weak transcription	Right Atrium	heart
45	chr9:116305600-116310400	Weak transcription	K562	blood
46	chr9:116305800-116311600	Enhancers	Pancreas	Pancrea
47	chr9:116306000-116308200	Weak transcription	Lung	lung
48	chr9:116306000-116310400	Weak transcription	Fetal Thymus	thymus
49	chr9:116306200-116310400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr9:116306200-116310800	Weak transcription	Colonic Mucosa	Colon

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