Variant report

Variant	rs16934975
Chromosome Location	chr8:69644412-69644413
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69642750..69644961-chr8:69646657..69649716,3	MCF-7	breast:
2	chr8:69533205..69534813-chr8:69643253..69646107,2	MCF-7	breast:
3	chr8:69641983..69644775-chr8:69764738..69766361,2	MCF-7	breast:
4	chr8:69533271..69537103-chr8:69641120..69648413,10	MCF-7	breast:
5	chr8:69617982..69620073-chr8:69643463..69645434,2	MCF-7	breast:
6	chr8:69490101..69493148-chr8:69643448..69647067,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16934958	1.00[CEU][hapmap]
rs16934962	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56662213	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989590	0.97[ASN][1000 genomes]
rs6989754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996725	0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs7011532	0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs73275944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73275950	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7815302	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7834973	0.89[ASN][1000 genomes]
rs7845270	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69638000-69646400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:69640200-69645200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:69640200-69676800	Weak transcription	Aorta	Aorta
4	chr8:69641000-69644600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:69641600-69646400	Enhancers	Hela-S3	cervix
6	chr8:69642200-69646600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:69642400-69645400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:69642400-69650800	Weak transcription	Fetal Lung	lung
9	chr8:69643200-69645400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:69643200-69645800	Weak transcription	NHEK	skin
11	chr8:69643200-69646400	Weak transcription	HSMMtube	muscle
12	chr8:69643400-69645400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:69643400-69645400	Weak transcription	HMEC	breast
14	chr8:69643400-69645400	Weak transcription	HSMM	muscle
15	chr8:69643400-69645600	Weak transcription	NH-A	brain
16	chr8:69643600-69645400	Weak transcription	NHDF-Ad	bronchial
17	chr8:69643800-69646000	Enhancers	Liver	Liver
18	chr8:69644200-69645200	Weak transcription	NHLF	lung
19	chr8:69644400-69645400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:69644400-69645400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:69644400-69645400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:69644400-69645400	Weak transcription	A549	lung
23	chr8:69644400-69645400	Weak transcription	Osteobl	bone
24	chr8:69644400-69647000	Enhancers	HUVEC	blood vessel

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