Variant report

Variant	rs7834973
Chromosome Location	chr8:69639672-69639673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16934975	0.89[ASN][1000 genomes]
rs56662213	0.87[ASN][1000 genomes]
rs6989590	0.90[ASN][1000 genomes]
rs6989754	0.88[ASN][1000 genomes]
rs6996725	0.93[ASN][1000 genomes]
rs7011532	0.90[ASN][1000 genomes]
rs73275944	0.88[ASN][1000 genomes]
rs73275950	0.88[ASN][1000 genomes]
rs7815302	0.88[ASN][1000 genomes]
rs7845270	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv818636	chr8:69636599-69642205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69637000-69641000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:69637200-69642000	Weak transcription	HUVEC	blood vessel
3	chr8:69637400-69641000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:69638000-69641200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:69638000-69641400	Weak transcription	NHDF-Ad	bronchial
6	chr8:69638000-69646400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:69639600-69640200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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