Variant report

Variant	rs16935031
Chromosome Location	chr9:16771660-16771661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10962593	0.81[AFR][1000 genomes]
rs56201309	1.00[AMR][1000 genomes]
rs56870033	1.00[AMR][1000 genomes]
rs57058581	1.00[AMR][1000 genomes]
rs57833590	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58679326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59002011	1.00[AMR][1000 genomes]
rs73646242	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646245	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646249	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646252	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646254	1.00[AMR][1000 genomes]
rs73649033	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16745400-16774800	Weak transcription	Osteobl	bone
2	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:16755800-16778400	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:16762600-16786800	Weak transcription	NHLF	lung
5	chr9:16766400-16771800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr9:16767000-16775000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:16767200-16778200	Weak transcription	NHDF-Ad	bronchial
8	chr9:16767600-16795400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:16768000-16795000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr9:16768200-16771800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr9:16768400-16775000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:16768600-16773200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:16769000-16772200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:16769400-16782600	Weak transcription	Fetal Kidney	kidney
15	chr9:16769400-16784800	Weak transcription	Fetal Intestine Large	intestine
16	chr9:16769600-16771800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:16769800-16784000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:16769800-16787600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:16769800-16795400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:16770000-16773200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:16770000-16786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:16770200-16772200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:16770200-16773000	Weak transcription	Ovary	ovary
24	chr9:16770200-16773600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:16770400-16775600	Weak transcription	Fetal Stomach	stomach
26	chr9:16771000-16771800	Enhancers	Fetal Lung	lung
27	chr9:16771000-16778600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:16771200-16771800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:16771400-16774800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr9:16771600-16772400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr9:16771600-16773200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:16771600-16773400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:16771600-16775400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr9:16771600-16784000	Weak transcription	HSMM	muscle

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