Variant report

Variant	rs56870033
Chromosome Location	chr9:16785119-16785120
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10962593	0.85[AFR][1000 genomes]
rs16935031	1.00[AMR][1000 genomes]
rs56140305	0.83[AFR][1000 genomes]
rs56201309	1.00[AMR][1000 genomes]
rs57058581	1.00[AMR][1000 genomes]
rs57833590	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58679326	1.00[AMR][1000 genomes]
rs59002011	1.00[AMR][1000 genomes]
rs73646242	1.00[AMR][1000 genomes]
rs73646243	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646245	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646246	1.00[AMR][1000 genomes]
rs73646247	1.00[AMR][1000 genomes]
rs73646249	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73646254	1.00[AMR][1000 genomes]
rs73649033	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16754000-16787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:16762600-16786800	Weak transcription	NHLF	lung
3	chr9:16767600-16795400	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:16768000-16795000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:16769800-16787600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:16769800-16795400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:16770000-16786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:16773000-16795000	Weak transcription	HSMMtube	muscle
9	chr9:16774200-16787400	Weak transcription	NH-A	brain
10	chr9:16776000-16786600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:16776000-16787600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:16776200-16787400	Weak transcription	Osteobl	bone
13	chr9:16778400-16787400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:16778800-16787200	Weak transcription	NHDF-Ad	bronchial
15	chr9:16779000-16787200	Weak transcription	Psoas Muscle	Psoas
16	chr9:16782600-16785400	Enhancers	Colon Smooth Muscle	Colon
17	chr9:16782800-16787400	Weak transcription	HUVEC	blood vessel
18	chr9:16783000-16786800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr9:16783400-16785200	Weak transcription	Fetal Stomach	stomach
20	chr9:16783400-16787400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:16784000-16785200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:16784000-16786000	Enhancers	Ovary	ovary
23	chr9:16784200-16785200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:16784400-16785200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:16784400-16785200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr9:16784400-16785200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:16784400-16786000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:16784400-16802200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:16784600-16785200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:16784600-16785200	Enhancers	Stomach Smooth Muscle	stomach
31	chr9:16784600-16787400	Weak transcription	HSMM	muscle
32	chr9:16784800-16785200	Enhancers	Fetal Kidney	kidney
33	chr9:16785000-16785400	Enhancers	H1 Cell Line	embryonic stem cell
34	chr9:16785000-16786800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:16785000-16786800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:16785000-16792200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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