Variant report

Variant	rs16935543
Chromosome Location	chr11:18577810-18577811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11822477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12785895	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12794725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16935479	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34081721	0.94[AFR][1000 genomes]
rs35032055	0.94[AFR][1000 genomes]
rs35715013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35798683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35887178	0.82[AFR][1000 genomes]
rs61110079	1.00[EUR][1000 genomes]
rs71486870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
6	nsv975324	chr11:18563800-18581423	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv972915	chr11:18571883-18591969	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18549200-18583400	Weak transcription	Small Intestine	intestine
2	chr11:18549200-18591400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:18549400-18579200	Weak transcription	Pancreas	Pancrea
4	chr11:18549400-18583400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:18549400-18594400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:18549600-18608600	Weak transcription	Fetal Heart	heart
7	chr11:18549600-18609000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:18549600-18609000	Weak transcription	Fetal Brain Male	brain
9	chr11:18549800-18582400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:18549800-18588200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr11:18549800-18592000	Weak transcription	NHLF	lung
12	chr11:18549800-18594400	Weak transcription	K562	blood
13	chr11:18549800-18600600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:18550600-18591400	Weak transcription	Dnd41	blood
15	chr11:18552600-18601400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:18555800-18582800	Weak transcription	NHEK	skin
17	chr11:18558400-18592200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:18559200-18592800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:18562200-18598200	Weak transcription	Stomach Mucosa	stomach
20	chr11:18563200-18601200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr11:18563800-18608800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:18564000-18586400	Weak transcription	GM12878-XiMat	blood
23	chr11:18565200-18609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:18566200-18580800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:18566200-18601000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:18567200-18594600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr11:18567400-18601000	Strong transcription	Placenta	Placenta
28	chr11:18567800-18588200	Strong transcription	Adipose Nuclei	Adipose
29	chr11:18568600-18579200	Weak transcription	HepG2	liver
30	chr11:18568600-18591000	Weak transcription	HMEC	breast
31	chr11:18568600-18600800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:18571000-18579200	Weak transcription	NHDF-Ad	bronchial
33	chr11:18571200-18585600	Strong transcription	Fetal Stomach	stomach
34	chr11:18571400-18585200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr11:18571800-18580000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:18571800-18601200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:18572000-18588200	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:18572400-18578000	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:18573800-18585200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:18574400-18609400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:18574600-18580200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:18574600-18592200	Strong transcription	Liver	Liver
43	chr11:18574800-18580200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr11:18574800-18588600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:18575000-18578000	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr11:18575000-18578000	Strong transcription	Lung	lung
47	chr11:18575000-18578200	Strong transcription	Fetal Brain Female	brain
48	chr11:18575000-18580000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:18575000-18580000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:18575000-18580000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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