Variant report

Variant	rs35887178
Chromosome Location	chr11:18550010-18550011
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:18546581..18551368-chr11:18654825..18657467,6	K562	blood:
2	chr11:18432193..18433875-chr11:18547475..18550164,2	MCF-7	breast:
3	chr11:18343253..18347316-chr11:18546908..18550670,5	K562	blood:
4	chr11:18479966..18482806-chr11:18549124..18551467,2	K562	blood:
5	chr11:18546489..18551340-chr11:18552893..18563258,14	MCF-7	breast:
6	chr11:18414231..18417142-chr11:18548434..18550099,2	K562	blood:
7	chr11:18415399..18418482-chr11:18547632..18550708,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LDHAL6A-1	chr11:18548579-18550760	NONHSAT018294

No data

Variant related genes	Relation type
ENSG00000134333	Chromatin interaction
ENSG00000110756	Chromatin interaction
ENSG00000179119	Chromatin interaction
ENSG00000151116	Chromatin interaction
ENSG00000166796	Chromatin interaction
ENSG00000110768	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11822477	0.82[AFR][1000 genomes]
rs12792924	0.90[EUR][1000 genomes]
rs12794725	0.82[AFR][1000 genomes]
rs16935543	0.82[AFR][1000 genomes]
rs34532219	0.82[EUR][1000 genomes]
rs71486860	1.00[AMR][1000 genomes]
rs71486870	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1038015	chr11:18435855-18558211	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
6	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18549000-18550200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:18549000-18576400	Weak transcription	Gastric	stomach
3	chr11:18549000-18577000	Weak transcription	Spleen	Spleen
4	chr11:18549200-18550200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:18549200-18551200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:18549200-18554200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:18549200-18568200	Weak transcription	Lung	lung
8	chr11:18549200-18577000	Weak transcription	Esophagus	oesophagus
9	chr11:18549200-18583400	Weak transcription	Small Intestine	intestine
10	chr11:18549200-18591400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:18549400-18550400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:18549400-18553800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:18549400-18555200	Weak transcription	Aorta	Aorta
14	chr11:18549400-18576000	Weak transcription	Ovary	ovary
15	chr11:18549400-18576400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:18549400-18577000	Weak transcription	Colonic Mucosa	Colon
17	chr11:18549400-18579200	Weak transcription	Pancreas	Pancrea
18	chr11:18549400-18583400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:18549400-18594400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr11:18549600-18550400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr11:18549600-18550400	Enhancers	Left Ventricle	heart
22	chr11:18549600-18550400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:18549600-18552000	Weak transcription	Placenta	Placenta
24	chr11:18549600-18552400	Weak transcription	Primary B cells from cord blood	blood
25	chr11:18549600-18552600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:18549600-18552600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:18549600-18552600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:18549600-18553600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:18549600-18555200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:18549600-18555200	Weak transcription	Adipose Nuclei	Adipose
31	chr11:18549600-18555200	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:18549600-18555400	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:18549600-18555400	Weak transcription	HSMMtube	muscle
34	chr11:18549600-18557800	Weak transcription	Brain Hippocampus Middle	brain
35	chr11:18549600-18565000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr11:18549600-18565400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:18549600-18565800	Weak transcription	Brain Germinal Matrix	brain
38	chr11:18549600-18567600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:18549600-18568000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:18549600-18568400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:18549600-18575000	Weak transcription	Fetal Brain Female	brain
42	chr11:18549600-18575200	Weak transcription	Fetal Kidney	kidney
43	chr11:18549600-18576400	Weak transcription	Brain Substantia Nigra	brain
44	chr11:18549600-18576600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr11:18549600-18576800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:18549600-18577200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr11:18549600-18577800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr11:18549600-18608600	Weak transcription	Fetal Heart	heart
49	chr11:18549600-18609000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:18549600-18609000	Weak transcription	Fetal Brain Male	brain

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