Variant report

Variant	rs16936483
Chromosome Location	chr9:18260421-18260422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2776660	1.00[AMR][1000 genomes]
rs35797706	1.00[AMR][1000 genomes]
rs7860151	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18225800-18260600	Weak transcription	Aorta	Aorta
2	chr9:18256200-18261200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:18256400-18260600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:18256800-18260800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:18256800-18260800	Weak transcription	Fetal Lung	lung
6	chr9:18256800-18265200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:18257000-18267200	Weak transcription	NHDF-Ad	bronchial
8	chr9:18260000-18260800	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr9:18260000-18261800	Enhancers	Colon Smooth Muscle	Colon
10	chr9:18260200-18260800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr9:18260200-18260800	Enhancers	Ovary	ovary
12	chr9:18260200-18261400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:18260200-18261400	Enhancers	Osteobl	bone
14	chr9:18260200-18261600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:18260200-18261800	Enhancers	HSMM	muscle
16	chr9:18260200-18262400	Enhancers	HMEC	breast
17	chr9:18260400-18260800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:18260400-18260800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr9:18260400-18260800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:18260400-18260800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr9:18260400-18260800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:18260400-18260800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:18260400-18260800	Enhancers	Brain Germinal Matrix	brain
24	chr9:18260400-18260800	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:18260400-18260800	Enhancers	Left Ventricle	heart
26	chr9:18260400-18260800	Enhancers	Right Atrium	heart
27	chr9:18260400-18261000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:18260400-18261000	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:18260400-18261400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:18260400-18261400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:18260400-18261400	Enhancers	Fetal Heart	heart
32	chr9:18260400-18261800	Enhancers	Fetal Stomach	stomach

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