Variant report

Variant	rs16936494
Chromosome Location	chr9:18268820-18268821
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10429466	1.00[AMR][1000 genomes]
rs12115643	1.00[AMR][1000 genomes]
rs16936614	1.00[AMR][1000 genomes]
rs2383067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57198766	1.00[AMR][1000 genomes]
rs58472234	1.00[AMR][1000 genomes]
rs58472530	1.00[AMR][1000 genomes]
rs59656656	1.00[AMR][1000 genomes]
rs59748092	1.00[AMR][1000 genomes]
rs59896837	1.00[AMR][1000 genomes]
rs61439119	1.00[AMR][1000 genomes]
rs61460291	1.00[AMR][1000 genomes]
rs7023801	1.00[AMR][1000 genomes]
rs73643207	1.00[AMR][1000 genomes]
rs73643208	1.00[AMR][1000 genomes]
rs73643210	1.00[AMR][1000 genomes]
rs73645723	1.00[AMR][1000 genomes]
rs73645724	1.00[AMR][1000 genomes]
rs73645725	1.00[AMR][1000 genomes]
rs73645742	1.00[AMR][1000 genomes]
rs73645744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892684	chr9:18261485-18401585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18265200-18270200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:18266200-18269400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:18267200-18269000	Enhancers	NHDF-Ad	bronchial
4	chr9:18267200-18269400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:18267400-18269400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:18267800-18269000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:18268000-18269000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:18268000-18269000	Enhancers	HSMM	muscle
9	chr9:18268000-18269400	Enhancers	HUVEC	blood vessel
10	chr9:18268000-18269400	Enhancers	NHLF	lung
11	chr9:18268200-18269000	Enhancers	NH-A	brain
12	chr9:18268200-18269200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:18268200-18269400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:18268200-18269400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:18268200-18269600	Enhancers	Osteobl	bone
16	chr9:18268200-18270200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:18268200-18270400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:18268400-18269200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:18268400-18269200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr9:18268400-18269400	Enhancers	NHEK	skin
21	chr9:18268600-18269000	Weak transcription	HMEC	breast

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