Variant report

Variant	rs73643208
Chromosome Location	chr9:18246100-18246101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10429466	1.00[AMR][1000 genomes]
rs12115643	1.00[AMR][1000 genomes]
rs16936494	1.00[AMR][1000 genomes]
rs16936614	1.00[AMR][1000 genomes]
rs2383067	1.00[AMR][1000 genomes]
rs57198766	1.00[AMR][1000 genomes]
rs57647847	0.89[AFR][1000 genomes]
rs58472234	1.00[AMR][1000 genomes]
rs58472530	1.00[AMR][1000 genomes]
rs59656656	1.00[AMR][1000 genomes]
rs59748092	1.00[AMR][1000 genomes]
rs59896837	1.00[AMR][1000 genomes]
rs61439119	1.00[AMR][1000 genomes]
rs61460291	1.00[AMR][1000 genomes]
rs7023801	1.00[AMR][1000 genomes]
rs73643207	1.00[AMR][1000 genomes]
rs73643210	1.00[AMR][1000 genomes]
rs73645723	1.00[AMR][1000 genomes]
rs73645724	1.00[AMR][1000 genomes]
rs73645725	1.00[AMR][1000 genomes]
rs73645742	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73645744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18225800-18260600	Weak transcription	Aorta	Aorta
2	chr9:18245400-18247000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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