Variant report

Variant	rs16936568
Chromosome Location	chr8:49285600-49285601
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16935792	1.00[AFR][1000 genomes]
rs16937152	0.82[AFR][1000 genomes]
rs16937966	0.82[AFR][1000 genomes]
rs56246054	0.81[AFR][1000 genomes]
rs56976963	0.82[AFR][1000 genomes]
rs57455581	0.81[AFR][1000 genomes]
rs73678252	0.81[AFR][1000 genomes]
rs73678279	0.82[AFR][1000 genomes]
rs73678283	0.82[AFR][1000 genomes]
rs7843787	0.82[AFR][1000 genomes]
rs871919	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49282600-49286600	Enhancers	Stomach Mucosa	stomach
2	chr8:49282800-49285600	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49282800-49286800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:49282800-49286800	Enhancers	Placenta	Placenta
5	chr8:49282800-49287000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr8:49283400-49286200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:49283400-49288600	Weak transcription	NH-A	brain
8	chr8:49283800-49285600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:49283800-49285800	Enhancers	HSMMtube	muscle
10	chr8:49284000-49285600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:49284000-49285800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:49284000-49286400	Enhancers	Gastric	stomach
13	chr8:49284200-49291000	Weak transcription	Fetal Intestine Small	intestine
14	chr8:49284200-49291400	Weak transcription	Fetal Kidney	kidney
15	chr8:49284400-49285600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:49284400-49285600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:49284400-49285600	Weak transcription	NHDF-Ad	bronchial
18	chr8:49284400-49285600	Weak transcription	Osteobl	bone
19	chr8:49284400-49285800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:49284400-49289200	Weak transcription	Fetal Stomach	stomach
21	chr8:49284800-49286000	Weak transcription	Lung	lung
22	chr8:49284800-49288000	Weak transcription	NHLF	lung
23	chr8:49284800-49288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:49284800-49289000	Weak transcription	HSMM	muscle
25	chr8:49285000-49285600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:49285000-49286000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:49285000-49286600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:49285000-49289800	Weak transcription	Fetal Lung	lung
29	chr8:49285600-49286400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr8:49285600-49286600	Enhancers	Osteobl	bone
31	chr8:49285600-49286800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:49285600-49287000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:49285600-49287200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:49285600-49290000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:49285600-49292400	Enhancers	NHDF-Ad	bronchial

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