Variant report

Variant	rs16937966
Chromosome Location	chr8:49498971-49498972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:76)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:76 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:49498900-49499050	AoAF	blood vessel:	n/a	n/a
2	CTCF	chr8:49498840-49498990	Hela-S3	cervix:	n/a	n/a
3	CTCF	chr8:49498960-49499110	NHDF-neo	bronchial:	n/a	n/a
4	CTCF	chr8:49498940-49499090	BE2_C	brain:	n/a	n/a
5	CTCF	chr8:49498900-49499050	AG09309	skin:	n/a	n/a
6	CTCF	chr8:49498960-49499110	HMEC	breast:	n/a	n/a
7	CTCF	chr8:49498960-49499110	AG09309	skin:	n/a	n/a
8	CTCF	chr8:49498940-49499090	HMF	breast:	n/a	n/a
9	CTCF	chr8:49498956-49499117	GM12878	blood:	n/a	n/a
10	CTCF	chr8:49498920-49499070	GM12873	blood:	n/a	n/a
11	CTCF	chr8:49498940-49499090	HA-sp	spinal cord:	n/a	n/a
12	CTCF	chr8:49498919-49499107	Hela-S3	cervix:	n/a	n/a
13	CTCF	chr8:49498860-49499010	BJ	skin:	n/a	n/a
14	CTCF	chr8:49498920-49499070	AG04449	skin:	n/a	n/a
15	CTCF	chr8:49498961-49499049	GM12878	blood:	n/a	n/a
16	CTCF	chr8:49498960-49499110	BJ	skin:	n/a	n/a
17	CTCF	chr8:49498940-49499090	Caco-2	colon:	n/a	n/a
18	CTCF	chr8:49498824-49499141	K562	blood:	n/a	n/a
19	CTCF	chr8:49498860-49499010	GM12865	blood:	n/a	n/a
20	CTCF	chr8:49498880-49499030	HAc	cerebellar:	n/a	n/a
21	CTCF	chr8:49498920-49499070	AG04450	lung:	n/a	n/a
22	RFX5	chr8:49498968-49499105	K562	blood:	n/a	n/a
23	CTCF	chr8:49498880-49499030	K562	blood:	n/a	n/a
24	CTCF	chr8:49498900-49499050	HBMEC	blood vessel:	n/a	n/a
25	CTCF	chr8:49498960-49499110	HVMF	connective:	n/a	n/a
26	CTCF	chr8:49498900-49499050	AG04450	lung:	n/a	n/a
27	CTCF	chr8:49498940-49499090	GM12865	blood:	n/a	n/a
28	CTCF	chr8:49498940-49499090	RPTEC	kidney:	n/a	n/a
29	CTCF	chr8:49498940-49499090	GM06990	blood:	n/a	n/a
30	CTCF	chr8:49498920-49499070	GM12866	blood:	n/a	n/a
31	CTCF	chr8:49498900-49499050	HMF	breast:	n/a	n/a
32	CTCF	chr8:49498900-49499050	HPF	lung:	n/a	n/a
33	CTCF	chr8:49498920-49499070	GM12869	blood:	n/a	n/a
34	CTCF	chr8:49498920-49499070	AG10803	skin:	n/a	n/a
35	CTCF	chr8:49498880-49499030	Hela-S3	cervix:	n/a	n/a
36	CTCF	chr8:49498860-49499010	GM12864	blood:	n/a	n/a
37	CTCF	chr8:49498900-49499050	GM12864	blood:	n/a	n/a
38	CTCF	chr8:49498940-49499090	HPAF	blood vessel:	n/a	n/a
39	CTCF	chr8:49498951-49499052	MCF-7	breast:	n/a	n/a
40	CTCF	chr8:49498833-49499179	IMR90	lung:	n/a	n/a
41	CTCF	chr8:49498900-49499050	HEEpiC	esophagus:	n/a	n/a
42	CTCF	chr8:49498940-49499090	K562	blood:	n/a	n/a
43	CTCF	chr8:49498920-49499070	GM12868	blood:	n/a	n/a
44	CTCF	chr8:49498940-49499090	AoAF	blood vessel:	n/a	n/a
45	RAD21	chr8:49498863-49499063	H1-hESC	embryonic stem cell:	n/a	n/a
46	CTCF	chr8:49498940-49499090	GM12873	blood:	n/a	n/a
47	CTCF	chr8:49498916-49499094	HUVEC	blood vessel:	n/a	n/a
48	CTCF	chr8:49498920-49499070	AG09319	gingival:	n/a	n/a
49	CTCF	chr8:49498940-49499090	HCT-116	colon:	n/a	n/a
50	CTCF	chr8:49498933-49499046	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49488476..49491307-chr8:49497335..49499324,2	MCF-7	breast:
2	chr8:49497691..49500433-chr8:49509810..49512564,2	MCF-7	breast:
3	chr8:49491543..49494342-chr8:49496600..49499222,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233858	TF binding region

rs_ID	r²[population]
rs10957169	1.00[LWK][hapmap]
rs1502650	0.91[AFR][1000 genomes]
rs16936568	0.82[AFR][1000 genomes]
rs16937152	1.00[AFR][1000 genomes]
rs16937469	0.91[AFR][1000 genomes]
rs16937529	0.91[AFR][1000 genomes]
rs16937537	0.91[AFR][1000 genomes]
rs16937605	1.00[ASW][hapmap];0.91[AFR][1000 genomes]
rs16937608	0.91[AFR][1000 genomes]
rs16937632	0.91[AFR][1000 genomes]
rs16937638	0.91[AFR][1000 genomes]
rs16937670	0.91[AFR][1000 genomes]
rs16938559	1.00[LWK][hapmap]
rs56976963	1.00[AFR][1000 genomes]
rs57100592	0.91[AFR][1000 genomes]
rs57451381	0.84[AFR][1000 genomes]
rs58848984	0.91[AFR][1000 genomes]
rs6982845	0.91[AFR][1000 genomes]
rs6987372	1.00[ASW][hapmap];0.91[AFR][1000 genomes]
rs7008047	0.84[AFR][1000 genomes]
rs7009677	0.91[AFR][1000 genomes]
rs7013151	0.91[AFR][1000 genomes]
rs73678279	1.00[AFR][1000 genomes]
rs73678283	1.00[AFR][1000 genomes]
rs73678291	0.91[AFR][1000 genomes]
rs73678294	0.91[AFR][1000 genomes]
rs73678297	0.91[AFR][1000 genomes]
rs73678300	0.91[AFR][1000 genomes]
rs73678301	0.84[AFR][1000 genomes]
rs73680903	0.91[AFR][1000 genomes]
rs7824380	0.91[AFR][1000 genomes]
rs7825573	0.91[AFR][1000 genomes]
rs7843787	1.00[AFR][1000 genomes]
rs871919	1.00[AFR][1000 genomes]

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49486600-49503200	Weak transcription	Esophagus	oesophagus
2	chr8:49495000-49504600	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49495600-49501400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:49495600-49519000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49495800-49501200	Weak transcription	Aorta	Aorta
6	chr8:49495800-49503000	Weak transcription	Right Ventricle	heart
7	chr8:49496000-49502600	Weak transcription	Right Atrium	heart
8	chr8:49496400-49501000	Weak transcription	NHLF	lung
9	chr8:49496400-49504000	Weak transcription	Left Ventricle	heart
10	chr8:49496600-49501000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:49496600-49501000	Weak transcription	HSMM	muscle
12	chr8:49496600-49502000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:49496800-49500200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:49496800-49500600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:49496800-49500600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr8:49496800-49500600	Weak transcription	Adipose Nuclei	Adipose
17	chr8:49496800-49500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:49496800-49500800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:49496800-49501200	Weak transcription	NH-A	brain
20	chr8:49496800-49501200	Weak transcription	Osteobl	bone
21	chr8:49496800-49501400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:49496800-49501600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr8:49496800-49501600	Weak transcription	Ovary	ovary
24	chr8:49496800-49501800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:49496800-49502000	Weak transcription	Placenta	Placenta
26	chr8:49497000-49500400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:49497200-49501000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:49497400-49499800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr8:49497400-49500200	Weak transcription	NHDF-Ad	bronchial
30	chr8:49497400-49500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:49497600-49500000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:49497600-49501800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:49497600-49502000	Weak transcription	Fetal Lung	lung
34	chr8:49497800-49506600	Weak transcription	Fetal Kidney	kidney
35	chr8:49498400-49501800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links