Variant report

Variant	rs6987372
Chromosome Location	chr8:49436034-49436035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49435353..49436925-chr8:49666877..49668395,2	MCF-7	breast:
2	chr8:49435177..49436949-chr8:49532921..49535598,2	MCF-7	breast:
3	chr8:49426044..49428743-chr8:49433288..49436593,3	K562	blood:
4	chr8:49425584..49432430-chr8:49432984..49438812,10	MCF-7	breast:
5	chr8:49425999..49428743-chr8:49432404..49436593,3	K562	blood:

Variant related genes	Relation type
ENSG00000253140	Chromatin interaction
ENSG00000253455	Chromatin interaction
ENSG00000253702	Chromatin interaction

rs_ID	r²[population]
rs1502650	1.00[AFR][1000 genomes]
rs16937152	0.91[AFR][1000 genomes]
rs16937469	1.00[AFR][1000 genomes]
rs16937529	1.00[AFR][1000 genomes]
rs16937537	1.00[AFR][1000 genomes]
rs16937605	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs16937608	1.00[AFR][1000 genomes]
rs16937632	1.00[AFR][1000 genomes]
rs16937638	1.00[AFR][1000 genomes]
rs16937670	1.00[AFR][1000 genomes]
rs16937966	1.00[ASW][hapmap];0.91[AFR][1000 genomes]
rs56976963	0.91[AFR][1000 genomes]
rs57100592	1.00[AFR][1000 genomes]
rs57145061	0.85[AFR][1000 genomes]
rs58848984	1.00[AFR][1000 genomes]
rs6982845	1.00[AFR][1000 genomes]
rs7001481	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7009677	1.00[AFR][1000 genomes]
rs7013151	1.00[AFR][1000 genomes]
rs73678279	0.91[AFR][1000 genomes]
rs73678283	0.91[AFR][1000 genomes]
rs73678291	1.00[AFR][1000 genomes]
rs73678294	1.00[AFR][1000 genomes]
rs73678297	1.00[AFR][1000 genomes]
rs73678300	1.00[AFR][1000 genomes]
rs73678301	0.92[AFR][1000 genomes]
rs73680903	1.00[AFR][1000 genomes]
rs7824380	1.00[AFR][1000 genomes]
rs7825573	1.00[AFR][1000 genomes]
rs7843787	0.91[AFR][1000 genomes]
rs871919	0.91[AFR][1000 genomes]

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49427800-49438200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:49428000-49438400	Weak transcription	Psoas Muscle	Psoas
3	chr8:49428000-49448600	Weak transcription	Right Atrium	heart
4	chr8:49428400-49438400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:49432000-49438800	Enhancers	Fetal Muscle Leg	muscle
6	chr8:49432600-49438000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:49432600-49438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:49433400-49437000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:49433600-49436200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:49433600-49436800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:49433600-49436800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:49434000-49436400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:49434200-49436400	Bivalent Enhancer	Adipose Nuclei	Adipose
14	chr8:49434800-49436800	Enhancers	Fetal Lung	lung
15	chr8:49435000-49436200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr8:49435000-49436200	Enhancers	Left Ventricle	heart
17	chr8:49435200-49436200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr8:49435200-49436200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr8:49435200-49436400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
20	chr8:49435200-49436400	Enhancers	Aorta	Aorta
21	chr8:49435200-49436400	Bivalent Enhancer	Fetal Stomach	stomach
22	chr8:49435200-49437200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:49435200-49438000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:49435200-49439400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr8:49435200-49441400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:49435400-49436200	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr8:49435400-49436200	Flanking Active TSS	NHEK	skin
28	chr8:49435400-49438200	Weak transcription	NHLF	lung
29	chr8:49435600-49439600	Weak transcription	NHDF-Ad	bronchial
30	chr8:49435800-49436200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr8:49435800-49436200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr8:49435800-49436400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
33	chr8:49435800-49436400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:49435800-49436400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
35	chr8:49435800-49437200	Enhancers	Esophagus	oesophagus
36	chr8:49435800-49437200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr8:49435800-49437200	Enhancers	HMEC	breast
38	chr8:49435800-49437800	Weak transcription	Fetal Kidney	kidney
39	chr8:49435800-49438000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:49435800-49439000	Weak transcription	Osteobl	bone
41	chr8:49435800-49439600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:49435800-49441800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr8:49435800-49442000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr8:49436000-49436200	Enhancers	H1 Cell Line	embryonic stem cell
45	chr8:49436000-49436600	Enhancers	Fetal Brain Female	brain
46	chr8:49436000-49436800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr8:49436000-49436800	Enhancers	Fetal Thymus	thymus
48	chr8:49436000-49437200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:49436000-49438200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:49436000-49438600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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