Variant report

Variant	rs16937605
Chromosome Location	chr8:49427509-49427510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49426615..49429308-chr8:49832936..49835027,3	MCF-7	breast:
3	chr8:49427161..49428765-chr8:49437456..49440165,2	MCF-7	breast:
4	chr8:49420032..49424376-chr8:49425636..49428777,6	MCF-7	breast:
5	chr8:49426044..49428743-chr8:49433288..49436593,3	K562	blood:
6	chr11:62608644..62609150-chr8:49426940..49427727,2	HCT-116	colon:
7	chr8:49423563..49425293-chr8:49427104..49428839,2	MCF-7	breast:
8	chr8:49426903..49428543-chr8:49456209..49459000,2	MCF-7	breast:
9	chr8:49425428..49427661-chr8:49529540..49532467,2	MCF-7	breast:
10	chr8:49425401..49427959-chr8:49613311..49616115,2	K562	blood:
11	chr8:49425999..49428743-chr8:49432404..49436593,3	K562	blood:
12	chr8:49426158..49428177-chr8:49440459..49442488,2	MCF-7	breast:
13	chr8:49416623..49418414-chr8:49426088..49428237,3	MCF-7	breast:
14	chr8:49426670..49428318-chr8:49459036..49461539,2	K562	blood:
15	chr8:49426108..49428162-chr8:49531601..49534476,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction
ENSG00000253702	Chromatin interaction
ENSG00000253455	Chromatin interaction

rs_ID	r²[population]
rs1502650	1.00[AFR][1000 genomes]
rs16937152	0.91[AFR][1000 genomes]
rs16937469	1.00[AFR][1000 genomes]
rs16937529	1.00[AFR][1000 genomes]
rs16937537	1.00[AFR][1000 genomes]
rs16937608	1.00[AFR][1000 genomes]
rs16937632	1.00[AFR][1000 genomes]
rs16937638	1.00[AFR][1000 genomes]
rs16937670	1.00[AFR][1000 genomes]
rs16937966	1.00[ASW][hapmap];0.91[AFR][1000 genomes]
rs56976963	0.91[AFR][1000 genomes]
rs57100592	1.00[AFR][1000 genomes]
rs57145061	0.85[AFR][1000 genomes]
rs58848984	1.00[AFR][1000 genomes]
rs6982845	1.00[AFR][1000 genomes]
rs6987372	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7001481	1.00[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs7009677	1.00[AFR][1000 genomes]
rs7013151	1.00[AFR][1000 genomes]
rs73678279	0.91[AFR][1000 genomes]
rs73678283	0.91[AFR][1000 genomes]
rs73678291	1.00[AFR][1000 genomes]
rs73678294	1.00[AFR][1000 genomes]
rs73678297	1.00[AFR][1000 genomes]
rs73678300	1.00[AFR][1000 genomes]
rs73678301	0.92[AFR][1000 genomes]
rs73680903	1.00[AFR][1000 genomes]
rs7824380	1.00[AFR][1000 genomes]
rs7825573	1.00[AFR][1000 genomes]
rs7843787	0.91[AFR][1000 genomes]
rs871919	0.91[AFR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49426200-49427600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49426600-49427800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr8:49426600-49427800	Active TSS	Small Intestine	intestine
4	chr8:49426600-49428000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:49426600-49428000	Active TSS	Brain Cingulate Gyrus	brain
6	chr8:49426600-49428000	Active TSS	Fetal Brain Female	brain
7	chr8:49426600-49428000	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr8:49426600-49428200	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr8:49426600-49428200	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr8:49426800-49427600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:49426800-49427600	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr8:49426800-49427600	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr8:49426800-49427600	Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr8:49426800-49427600	Active TSS	Primary T cells from cord blood	blood
15	chr8:49426800-49427600	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr8:49426800-49427600	Active TSS	HepG2	liver
17	chr8:49426800-49427800	Active TSS	H1 Cell Line	embryonic stem cell
18	chr8:49426800-49427800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:49426800-49427800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr8:49426800-49427800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr8:49426800-49427800	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr8:49426800-49427800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:49426800-49427800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:49426800-49427800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr8:49426800-49427800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
26	chr8:49426800-49427800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr8:49426800-49427800	Active TSS	Brain Angular Gyrus	brain
28	chr8:49426800-49427800	Active TSS	Brain Hippocampus Middle	brain
29	chr8:49426800-49427800	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr8:49426800-49427800	Active TSS	Colon Smooth Muscle	Colon
31	chr8:49426800-49427800	Active TSS	Esophagus	oesophagus
32	chr8:49426800-49427800	Active TSS	Fetal Kidney	kidney
33	chr8:49426800-49427800	Active TSS	Left Ventricle	heart
34	chr8:49426800-49428000	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr8:49426800-49428000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr8:49426800-49428000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:49426800-49428000	Active TSS	Aorta	Aorta
38	chr8:49426800-49428000	Active TSS	Brain Germinal Matrix	brain
39	chr8:49426800-49428000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr8:49426800-49428000	Active TSS	Ovary	ovary
41	chr8:49426800-49428000	Active TSS	Psoas Muscle	Psoas
42	chr8:49426800-49428000	Active TSS	Rectal Smooth Muscle	rectum
43	chr8:49426800-49428000	Active TSS	Right Ventricle	heart
44	chr8:49426800-49428000	Flanking Bivalent TSS/Enh	Dnd41	blood
45	chr8:49426800-49428000	Flanking Active TSS	HMEC	breast
46	chr8:49426800-49428200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
47	chr8:49426800-49428200	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr8:49427000-49427600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr8:49427000-49427600	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr8:49427000-49427600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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