Variant report

Variant	rs16937142
Chromosome Location	chr9:18849492-18849493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1001379	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs10117736	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs10121884	0.85[AFR][1000 genomes]
rs10811050	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10963806	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs10963808	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7033096	0.83[YRI][hapmap]
rs73423138	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18825400-18857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:18825600-18857400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:18827200-18861600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:18830800-18857400	Weak transcription	NHLF	lung
5	chr9:18845200-18852400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:18845200-18853600	Strong transcription	HSMM	muscle
7	chr9:18845200-18854200	Strong transcription	Osteobl	bone
8	chr9:18845200-18854800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:18845800-18861200	Weak transcription	Aorta	Aorta
10	chr9:18845800-18861800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:18846200-18852200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:18846400-18849600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:18846600-18850200	Enhancers	Fetal Heart	heart
14	chr9:18846800-18853400	Weak transcription	HSMMtube	muscle
15	chr9:18847400-18858400	Weak transcription	NH-A	brain
16	chr9:18847800-18850200	Weak transcription	Fetal Stomach	stomach
17	chr9:18847800-18858600	Weak transcription	Gastric	stomach
18	chr9:18848000-18849600	Enhancers	Stomach Mucosa	stomach
19	chr9:18848400-18850600	Strong transcription	NHDF-Ad	bronchial
20	chr9:18848600-18850600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr9:18848800-18849600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr9:18849000-18849600	Enhancers	HUVEC	blood vessel
23	chr9:18849000-18850000	Enhancers	Duodenum Mucosa	Duodenum
24	chr9:18849000-18850600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:18849200-18850800	Enhancers	Fetal Muscle Leg	muscle
26	chr9:18849200-18853800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:18849400-18849600	Enhancers	Right Atrium	heart
28	chr9:18849400-18850600	Enhancers	Left Ventricle	heart
29	chr9:18849400-18850600	Enhancers	Right Ventricle	heart
30	chr9:18849400-18850600	Enhancers	Spleen	Spleen
31	chr9:18849400-18861200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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