Variant report

Variant	rs10811050
Chromosome Location	chr9:18859961-18859962
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1001379	0.85[CHB][hapmap];0.89[YRI][hapmap]
rs10117736	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10121884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122166	1.00[MEX][hapmap]
rs10811043	1.00[MEX][hapmap]
rs10963802	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963803	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963806	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963807	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10963808	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16937142	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4977426	1.00[CEU][hapmap]
rs57229120	0.87[ASN][1000 genomes]
rs7033096	0.81[YRI][hapmap]
rs7039790	0.83[ASW][hapmap];0.94[CHB][hapmap];0.86[GIH][hapmap];0.80[ASN][1000 genomes]
rs73423138	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7862903	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7874886	0.88[ASN][1000 genomes]
rs934483	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18827200-18861600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:18845800-18861200	Weak transcription	Aorta	Aorta
3	chr9:18845800-18861800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:18849400-18861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:18850800-18860800	Weak transcription	Fetal Stomach	stomach
6	chr9:18851800-18861200	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:18852000-18861200	Weak transcription	Left Ventricle	heart
8	chr9:18852400-18861200	Weak transcription	Right Ventricle	heart
9	chr9:18853600-18861200	Weak transcription	HSMMtube	muscle
10	chr9:18856200-18861200	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:18856200-18861200	Weak transcription	Ovary	ovary
12	chr9:18858000-18860600	Weak transcription	Fetal Heart	heart
13	chr9:18858000-18860800	Weak transcription	Fetal Lung	lung
14	chr9:18858000-18862000	Weak transcription	HUVEC	blood vessel
15	chr9:18858400-18861600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:18858400-18861600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:18858600-18861400	Weak transcription	Adipose Nuclei	Adipose
18	chr9:18858800-18860800	Weak transcription	HSMM	muscle
19	chr9:18858800-18861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:18858800-18861200	Weak transcription	Right Atrium	heart
21	chr9:18858800-18861200	Weak transcription	NHDF-Ad	bronchial
22	chr9:18858800-18861400	Weak transcription	NH-A	brain
23	chr9:18858800-18862600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:18858800-18862600	Weak transcription	NHLF	lung
25	chr9:18858800-18876600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:18859400-18861200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:18859400-18861600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:18859800-18860800	Weak transcription	Osteobl	bone

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