Variant report

Variant	rs7039790
Chromosome Location	chr9:18863560-18863561
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10121884	0.80[ASN][1000 genomes]
rs10811050	0.83[ASW][hapmap];0.94[CHB][hapmap];0.86[GIH][hapmap];0.80[ASN][1000 genomes]
rs10963802	0.80[ASN][1000 genomes]
rs10963803	0.80[ASN][1000 genomes]
rs10963806	1.00[CHB][hapmap];0.86[GIH][hapmap];0.80[ASN][1000 genomes]
rs10963807	1.00[CHB][hapmap];0.86[GIH][hapmap]
rs10963808	0.83[ASW][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.80[ASN][1000 genomes]
rs57229120	0.85[EUR][1000 genomes]
rs7862903	0.94[ASW][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];0.81[MKK][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs934483	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18858800-18876600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:18860800-18864800	Enhancers	Fetal Lung	lung
3	chr9:18860800-18864800	Enhancers	Fetal Stomach	stomach
4	chr9:18861200-18865000	Enhancers	Fetal Muscle Leg	muscle
5	chr9:18861600-18863800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:18862200-18864400	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:18862400-18864000	Enhancers	Colon Smooth Muscle	Colon
8	chr9:18862400-18865600	Weak transcription	Fetal Brain Male	brain
9	chr9:18862400-18866800	Weak transcription	Right Ventricle	heart
10	chr9:18862600-18863600	Genic enhancers	NHDF-Ad	bronchial
11	chr9:18862600-18864000	Weak transcription	Brain Anterior Caudate	brain
12	chr9:18862600-18864000	Enhancers	Stomach Smooth Muscle	stomach
13	chr9:18862600-18864400	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr9:18862600-18864800	Genic enhancers	Osteobl	bone
15	chr9:18862600-18865000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:18862600-18866200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:18862800-18864000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:18862800-18864000	Weak transcription	Adipose Nuclei	Adipose
19	chr9:18862800-18864400	Weak transcription	NHLF	lung
20	chr9:18862800-18870000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr9:18863000-18864200	Weak transcription	Fetal Muscle Trunk	muscle
22	chr9:18863000-18864400	Strong transcription	NH-A	brain
23	chr9:18863000-18871200	Strong transcription	HSMM	muscle
24	chr9:18863200-18863600	Weak transcription	Aorta	Aorta
25	chr9:18863200-18864200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr9:18863200-18865000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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