Variant report

Variant	rs16937219
Chromosome Location	chr10:54879218-54879219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16937216	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16937220	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58128656	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58629310	1.00[EUR][1000 genomes]
rs66530853	1.00[EUR][1000 genomes]
rs66694008	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66977955	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67310348	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72802339	0.92[EUR][1000 genomes]
rs72802345	0.92[EUR][1000 genomes]
rs72802351	0.94[EUR][1000 genomes]
rs72802363	0.97[EUR][1000 genomes]
rs7899553	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2761596	chr10:54814054-54886345	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv825385	chr10:54878972-54950501	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54877200-54881000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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