Variant report

Variant	rs72802339
Chromosome Location	chr10:54861164-54861165
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16937216	0.92[EUR][1000 genomes]
rs16937219	0.92[EUR][1000 genomes]
rs16937220	0.89[EUR][1000 genomes]
rs58128656	0.97[EUR][1000 genomes]
rs58629310	0.92[EUR][1000 genomes]
rs66530853	0.92[EUR][1000 genomes]
rs66694008	0.89[EUR][1000 genomes]
rs66977955	0.89[EUR][1000 genomes]
rs67310348	0.89[EUR][1000 genomes]
rs72802337	1.00[AFR][1000 genomes]
rs72802345	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802351	0.97[EUR][1000 genomes]
rs72802363	0.89[EUR][1000 genomes]
rs7899553	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467201	chr10:54697623-54929003	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550906	chr10:54697623-54929003	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv470939	chr10:54700783-54917339	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2761596	chr10:54814054-54886345	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv895407	chr10:54824741-54865961	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv2547291	chr10:54860050-54861679	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3394014	chr10:54860596-54861644	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv7783	chr10:54860614-54861370	Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv2139502	chr10:54860620-54861335	Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3503618	chr10:54860709-54861229	Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3502691	chr10:54860716-54861238	Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv3502692	chr10:54860730-54861225	Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3811	chr10:54860740-54861201	Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv3503729	chr10:54860749-54861200	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3502694	chr10:54860752-54861179	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3503507	chr10:54860753-54861238	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3502693	chr10:54860770-54861173	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54845200-54865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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