Variant report

Variant	rs16937874
Chromosome Location	chr10:52289103-52289104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52288714..52291350-chr10:52382116..52385010,2	K562	blood:
2	chr10:52287244..52289297-chr10:52294304..52296791,2	K562	blood:
3	chr10:52120816..52123329-chr10:52287278..52290056,2	MCF-7	breast:
4	chr10:52288714..52294578-chr10:52381112..52386074,5	K562	blood:

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10218880	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10218927	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1028534	1.00[CEU][hapmap]
rs11006161	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006168	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006177	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006224	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241613	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12243444	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12261465	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs12262564	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12569801	1.00[CEU][hapmap]
rs12569909	1.00[CEU][hapmap]
rs12573520	1.00[CEU][hapmap]
rs16937491	1.00[CEU][hapmap]
rs16937722	0.86[YRI][hapmap]
rs16937771	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs16937775	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs16937786	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs3739990	1.00[CEU][hapmap]
rs41427847	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs56808429	1.00[EUR][1000 genomes]
rs58493447	1.00[EUR][1000 genomes]
rs61595381	1.00[EUR][1000 genomes]
rs66936815	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67025766	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67114363	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67414877	1.00[EUR][1000 genomes]
rs72803714	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7911643	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv895391	chr10:52260398-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv895392	chr10:52263910-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv467193	chr10:52265265-52289664	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv550855	chr10:52265265-52289664	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52271600-52300600	Weak transcription	Aorta	Aorta
2	chr10:52272600-52302800	Weak transcription	Fetal Stomach	stomach
3	chr10:52273600-52289600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:52273600-52298400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:52273600-52299800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:52275200-52294200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:52279400-52298200	Weak transcription	Fetal Intestine Small	intestine
8	chr10:52279600-52290000	Weak transcription	Primary B cells from cord blood	blood
9	chr10:52279600-52298400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:52279600-52298400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:52279600-52298800	Weak transcription	Lung	lung
12	chr10:52279800-52298600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr10:52282800-52291200	Weak transcription	Esophagus	oesophagus
15	chr10:52282800-52301200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:52283000-52300400	Weak transcription	Psoas Muscle	Psoas
17	chr10:52284400-52292400	Weak transcription	Brain Angular Gyrus	brain
18	chr10:52284600-52297600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:52284800-52289600	Weak transcription	Fetal Lung	lung
20	chr10:52285400-52293200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr10:52286200-52289400	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:52286200-52291400	Weak transcription	Gastric	stomach
23	chr10:52286400-52304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:52287000-52290200	Enhancers	Brain Substantia Nigra	brain
25	chr10:52287200-52290000	Enhancers	Brain Cingulate Gyrus	brain
26	chr10:52287400-52290000	Weak transcription	Right Atrium	heart
27	chr10:52287400-52298200	Weak transcription	Left Ventricle	heart
28	chr10:52287600-52289600	Weak transcription	Brain Anterior Caudate	brain
29	chr10:52287600-52291200	Weak transcription	Pancreas	Pancrea
30	chr10:52287600-52291600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:52287600-52292000	Weak transcription	Stomach Mucosa	stomach
32	chr10:52287600-52294000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:52287600-52296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:52287600-52296800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:52287800-52302800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:52288200-52289400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr10:52288200-52298600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:52288400-52290800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:52288400-52291600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:52288600-52291200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr10:52288600-52300000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr10:52288800-52291200	Weak transcription	K562	blood
43	chr10:52288800-52291800	Weak transcription	Fetal Heart	heart

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