Variant report

Variant	rs61595381
Chromosome Location	chr10:52431732-52431733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10218880	1.00[EUR][1000 genomes]
rs10218927	1.00[EUR][1000 genomes]
rs11006161	1.00[EUR][1000 genomes]
rs11006168	1.00[EUR][1000 genomes]
rs11006177	1.00[EUR][1000 genomes]
rs11006224	1.00[EUR][1000 genomes]
rs12241613	1.00[EUR][1000 genomes]
rs12243444	1.00[EUR][1000 genomes]
rs12261465	1.00[EUR][1000 genomes]
rs12262564	1.00[EUR][1000 genomes]
rs16937874	1.00[EUR][1000 genomes]
rs56808429	1.00[EUR][1000 genomes]
rs58493447	1.00[EUR][1000 genomes]
rs66936815	1.00[EUR][1000 genomes]
rs67025766	1.00[EUR][1000 genomes]
rs67114363	1.00[EUR][1000 genomes]
rs72803714	1.00[EUR][1000 genomes]
rs7911643	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv948007	chr10:52414948-52500270	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv8662	chr10:52416662-52461079	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv982771	chr10:52429648-52432710	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52420000-52434200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:52431000-52432600	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr10:52431200-52431800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr10:52431200-52432000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:52431400-52431800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:52431400-52432200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:52431400-52432600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:52431600-52432200	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:52431600-52432200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:52431600-52432400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:52431600-52432400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr10:52431600-52432400	Enhancers	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links