Variant report

Variant	rs16938206
Chromosome Location	chr11:45289420-45289421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10501312	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10769144	1.00[AMR][1000 genomes]
rs16926615	0.87[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16938191	1.00[ASN][1000 genomes]
rs2863177	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2902431	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4462326	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4755315	1.00[AMR][1000 genomes]
rs6485610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6485611	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7394569	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7481481	1.00[AMR][1000 genomes]
rs7483783	1.00[YRI][hapmap]
rs896329	1.00[AMR][1000 genomes]
rs896333	1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45284400-45290200	Enhancers	Fetal Intestine Large	intestine
2	chr11:45287000-45289600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:45287400-45289800	Weak transcription	Fetal Brain Female	brain
4	chr11:45288400-45289600	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:45288600-45289800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:45288600-45290000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:45288800-45289600	Enhancers	Colonic Mucosa	Colon
8	chr11:45288800-45289800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:45288800-45289800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:45288800-45290400	Genic enhancers	Fetal Intestine Small	intestine
11	chr11:45289000-45289600	Weak transcription	Pancreas	Pancrea
12	chr11:45289000-45289800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:45289000-45289800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
14	chr11:45289000-45290000	Flanking Active TSS	A549	lung
15	chr11:45289000-45292600	Weak transcription	Gastric	stomach
16	chr11:45289200-45289600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:45289200-45289600	Bivalent Enhancer	Brain Germinal Matrix	brain
18	chr11:45289200-45289800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:45289400-45290000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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