Variant report

Variant	rs16938298
Chromosome Location	chr11:45559532-45559533
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11038416	1.00[EUR][1000 genomes]
rs73460210	1.00[EUR][1000 genomes]
rs73460224	1.00[EUR][1000 genomes]
rs73460228	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045831	chr11:45419113-45580407	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45540200-45560200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45553400-45559600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:45554200-45570600	Weak transcription	Brain Germinal Matrix	brain
4	chr11:45554600-45559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:45554600-45563000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:45554800-45563000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:45556200-45571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:45557800-45559600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:45558600-45559800	Weak transcription	Fetal Brain Female	brain
10	chr11:45558800-45562600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:45559000-45560800	Enhancers	Osteobl	bone
12	chr11:45559000-45561200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:45559200-45560400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:45559200-45560600	Bivalent Enhancer	Fetal Stomach	stomach
15	chr11:45559200-45561400	Enhancers	Fetal Brain Male	brain
16	chr11:45559400-45560000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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