Variant report

Variant	rs11038416
Chromosome Location	chr11:45394048-45394049
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45385615..45387416-chr11:45393946..45395644,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRDM11-4	chr11:45392948-45394391	XLOC_009121

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16938298	1.00[EUR][1000 genomes]
rs73460210	1.00[EUR][1000 genomes]
rs73460224	1.00[EUR][1000 genomes]
rs73460228	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45388400-45395800	Weak transcription	Liver	Liver
2	chr11:45393000-45394400	Enhancers	Fetal Brain Male	brain
3	chr11:45393000-45395600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:45393200-45394200	Weak transcription	Pancreas	Pancrea
5	chr11:45393200-45395400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:45393200-45395400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr11:45393200-45395800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:45393400-45394200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:45393400-45394200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:45393400-45394400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:45393400-45395800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:45393400-45395800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr11:45393400-45395800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:45393400-45395800	Weak transcription	Thymus	Thymus
15	chr11:45393400-45396400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr11:45393600-45394400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:45393600-45394600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:45393600-45394600	Enhancers	Brain Germinal Matrix	brain
19	chr11:45393800-45397000	Enhancers	Fetal Thymus	thymus
20	chr11:45393800-45406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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