Variant report

Variant	rs16940388
Chromosome Location	chr15:58798833-58798834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58797035..58800948-chr15:58803702..58808140,4	K562	blood:
2	chr15:58797460..58800451-chr15:58803881..58805523,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12904012	0.87[AFR][1000 genomes]
rs12905076	0.81[AFR][1000 genomes]
rs16940372	0.92[AFR][1000 genomes]
rs1979178	0.90[AFR][1000 genomes]
rs7163555	0.84[AFR][1000 genomes]
rs73412726	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv904268	chr15:58763678-58803225	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58791400-58809400	Weak transcription	Spleen	Spleen
2	chr15:58793400-58803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:58795800-58799400	Enhancers	Fetal Thymus	thymus
4	chr15:58796400-58799400	Enhancers	Fetal Muscle Leg	muscle
5	chr15:58796400-58799600	Enhancers	Primary T cells from cord blood	blood
6	chr15:58797000-58799200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:58797200-58799000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr15:58797200-58799000	Enhancers	Right Ventricle	heart
9	chr15:58797200-58799000	Enhancers	HSMM	muscle
10	chr15:58797200-58799200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr15:58797200-58799200	Enhancers	Right Atrium	heart
12	chr15:58797400-58799200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr15:58797400-58799200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr15:58797400-58799200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:58797400-58799200	Enhancers	Esophagus	oesophagus
16	chr15:58797400-58799600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:58797400-58799800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:58797400-58800000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:58797400-58800000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:58797600-58799000	Enhancers	Thymus	Thymus
21	chr15:58797600-58799200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr15:58797600-58799400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:58797600-58799600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:58797600-58799800	Enhancers	HMEC	breast
25	chr15:58797800-58799000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr15:58797800-58799000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr15:58797800-58799000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:58797800-58799000	Enhancers	Duodenum Mucosa	Duodenum
29	chr15:58797800-58799400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr15:58798000-58799000	Enhancers	Placenta	Placenta
31	chr15:58798200-58799000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr15:58798200-58799000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:58798200-58799000	Enhancers	Fetal Intestine Large	intestine
34	chr15:58798200-58799000	Enhancers	Psoas Muscle	Psoas
35	chr15:58798200-58799000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:58798200-58799000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr15:58798200-58799000	Enhancers	Stomach Mucosa	stomach
38	chr15:58798200-58799800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:58798400-58799000	Enhancers	Fetal Muscle Trunk	muscle
40	chr15:58798400-58799800	Weak transcription	K562	blood
41	chr15:58798600-58799000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr15:58798600-58799000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr15:58798600-58799400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:58798600-58799600	Enhancers	Monocytes-CD14+_RO01746	blood
45	chr15:58798600-58799800	Enhancers	NHEK	skin
46	chr15:58798600-58807800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr15:58798600-58813200	Weak transcription	Aorta	Aorta
48	chr15:58798800-58799000	Enhancers	Hela-S3	cervix
49	chr15:58798800-58799200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr15:58798800-58799200	Enhancers	HSMMtube	muscle

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