Variant report

Variant	rs16940734
Chromosome Location	chr15:45508118-45508119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr15:45507713-45508127	K562	blood:	n/a	n/a
2	TAL1	chr15:45507874-45508213	K562	blood:	n/a	n/a
3	GATA2	chr15:45507791-45508215	K562	blood:	n/a	n/a
4	TEAD4	chr15:45507738-45508169	K562	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45502112..45504054-chr15:45507904..45509408,2	K562	blood:
2	chr15:45491035..45492770-chr15:45505625..45508217,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC28A2-2	chr15:45507745-45508141	NONHSAT042228

No data

Variant related genes	Relation type
ENSG00000261709	TF binding region
ENSG00000259932	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10519020	1.00[MEX][hapmap]
rs1145073	1.00[MEX][hapmap]
rs1153851	1.00[MEX][hapmap]
rs12324044	1.00[MEX][hapmap]
rs13380419	1.00[MEX][hapmap]
rs16940656	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16941188	1.00[MEX][hapmap]
rs16941213	1.00[MEX][hapmap]
rs16941242	1.00[MEX][hapmap]
rs16941955	0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16942588	1.00[AMR][1000 genomes]
rs16952710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16977579	1.00[MEX][hapmap]
rs2002813	1.00[MEX][hapmap]
rs59571341	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59648323	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60642128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61419597	0.85[AFR][1000 genomes]
rs7180106	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv869616	chr15:45401411-45736209	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv977712	chr15:45501081-45515127	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45505200-45513400	Weak transcription	Stomach Mucosa	stomach
2	chr15:45508000-45508200	Enhancers	Placenta	Placenta
3	chr15:45508000-45510200	Weak transcription	Fetal Intestine Small	intestine

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