Variant report
Variant | rs7180106 |
---|---|
Chromosome Location | chr15:45384665-45384666 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:45382474..45386496-chr15:45391013..45393744,4 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000140279 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10519020 | 1.00[MEX][hapmap] |
rs10851420 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11070442 | 1.00[CEU][hapmap] |
rs1108085 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes] |
rs12324044 | 1.00[MEX][hapmap] |
rs13380419 | 1.00[MEX][hapmap] |
rs16939755 | 1.00[CEU][hapmap] |
rs16940734 | 1.00[MEX][hapmap] |
rs16941188 | 1.00[MEX][hapmap] |
rs16941213 | 1.00[MEX][hapmap] |
rs16941242 | 1.00[MEX][hapmap] |
rs16975231 | 0.92[ASN][1000 genomes] |
rs16977579 | 1.00[MEX][hapmap] |
rs16977754 | 1.00[CEU][hapmap] |
rs1961660 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs199138 | 1.00[JPT][hapmap] |
rs2001616 | 0.82[JPT][hapmap] |
rs2002813 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2271435 | 1.00[CEU][hapmap] |
rs2554451 | 1.00[JPT][hapmap] |
rs269859 | 0.85[JPT][hapmap] |
rs269862 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs269863 | 1.00[JPT][hapmap] |
rs269866 | 0.85[JPT][hapmap] |
rs269868 | 1.00[JPT][hapmap] |
rs28488149 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs3743222 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs3784576 | 1.00[CEU][hapmap] |
rs4775744 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs56323146 | 0.92[ASN][1000 genomes] |
rs56838826 | 0.92[ASN][1000 genomes] |
rs57781213 | 0.96[ASN][1000 genomes] |
rs58571185 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs61626661 | 0.92[ASN][1000 genomes] |
rs61730032 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6493134 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7171366 | 0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7175848 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7179334 | 0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7179784 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7180976 | 0.89[EUR][1000 genomes] |
rs7183046 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs73406334 | 0.92[ASN][1000 genomes] |
rs73406337 | 0.92[ASN][1000 genomes] |
rs73406361 | 0.89[EUR][1000 genomes] |
rs8024922 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs8028462 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs953733 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2758380 | chr15:44968868-45422842 | Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
2 | esv2760029 | chr15:44968868-45422842 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 95 gene(s) | inside rSNPs | diseases |
3 | nsv916374 | chr15:45058112-45769052 | Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 104 gene(s) | inside rSNPs | diseases |
4 | nsv932147 | chr15:45319178-45872076 | Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
5 | nsv427961 | chr15:45338381-45491634 | Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
6 | nsv457124 | chr15:45381998-45460422 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
7 | nsv569312 | chr15:45381998-45460422 | Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:45363800-45398400 | Weak transcription | Gastric | stomach |
2 | chr15:45373600-45389400 | Weak transcription | Pancreas | Pancrea |
3 | chr15:45381400-45404600 | Weak transcription | Right Atrium | heart |
4 | chr15:45383400-45395200 | Weak transcription | Colonic Mucosa | Colon |
5 | chr15:45383600-45386400 | Weak transcription | Right Ventricle | heart |
6 | chr15:45384200-45386200 | Weak transcription | K562 | blood |
7 | chr15:45384400-45386400 | Weak transcription | Esophagus | oesophagus |
8 | chr15:45384600-45385600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |