Variant report

Variant	rs16941111
Chromosome Location	chr15:59469913-59469914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59468439..59470202-chr15:59473986..59476480,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11852281	0.82[AFR][1000 genomes]
rs11854052	0.80[AFR][1000 genomes]
rs11854099	0.92[YRI][hapmap]
rs17190826	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17269545	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17269559	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59436000-59473000	Weak transcription	Brain Germinal Matrix	brain
2	chr15:59437800-59484400	Weak transcription	Fetal Brain Male	brain
3	chr15:59445600-59479600	Weak transcription	Fetal Kidney	kidney
4	chr15:59451200-59473600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:59451400-59470400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:59451600-59474600	Weak transcription	Psoas Muscle	Psoas
7	chr15:59453800-59470000	Weak transcription	Right Ventricle	heart
8	chr15:59454000-59482000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:59454800-59471600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:59458000-59470000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:59458600-59473800	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:59461000-59474800	Strong transcription	Liver	Liver
13	chr15:59463200-59473000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:59463600-59470200	Weak transcription	Esophagus	oesophagus
15	chr15:59463600-59471800	Weak transcription	Small Intestine	intestine
16	chr15:59463800-59470200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:59464000-59472800	Weak transcription	Ovary	ovary
18	chr15:59464200-59470000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:59464200-59470400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:59464200-59470800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:59464200-59471600	Weak transcription	Pancreas	Pancrea
22	chr15:59464200-59474000	Weak transcription	HepG2	liver
23	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr15:59466800-59473200	Weak transcription	Primary B cells from cord blood	blood
25	chr15:59466800-59474200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr15:59467200-59470200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:59467200-59470600	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:59467200-59474000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr15:59467400-59470400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:59467600-59473600	Weak transcription	Colon Smooth Muscle	Colon
31	chr15:59467800-59470200	Weak transcription	Lung	lung
32	chr15:59467800-59470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:59467800-59473400	Strong transcription	Fetal Intestine Small	intestine
34	chr15:59467800-59473600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:59467800-59473800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr15:59467800-59479600	Weak transcription	Brain Angular Gyrus	brain
37	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
38	chr15:59468000-59470200	Weak transcription	Brain Substantia Nigra	brain
39	chr15:59468000-59470600	Weak transcription	Fetal Heart	heart
40	chr15:59468000-59474000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:59468000-59479800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:59468000-59480000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
44	chr15:59468400-59470000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr15:59468600-59470000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:59468600-59470200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:59468600-59472200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:59468600-59472800	Strong transcription	Osteobl	bone
49	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr15:59468800-59470400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links