Variant report

Variant	rs17190826
Chromosome Location	chr15:59482338-59482339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16941111	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17269545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17269559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040100	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59437800-59484400	Weak transcription	Fetal Brain Male	brain
2	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
4	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
5	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
6	chr15:59468800-59490800	Strong transcription	Duodenum Mucosa	Duodenum
7	chr15:59468800-59492600	Strong transcription	Fetal Intestine Large	intestine
8	chr15:59469000-59482800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:59470800-59485200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:59471000-59484000	Weak transcription	Esophagus	oesophagus
11	chr15:59474000-59483400	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:59474400-59482400	Weak transcription	HepG2	liver
13	chr15:59474400-59483800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr15:59474400-59484600	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:59475000-59483000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:59475000-59483000	Strong transcription	NHEK	skin
17	chr15:59475200-59486800	Weak transcription	Pancreas	Pancrea
18	chr15:59475200-59503200	Strong transcription	Liver	Liver
19	chr15:59475400-59485200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:59475800-59483800	Strong transcription	Hela-S3	cervix
21	chr15:59475800-59498200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr15:59475800-59517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:59476000-59488000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:59476200-59490600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr15:59476400-59482800	Strong transcription	NHDF-Ad	bronchial
26	chr15:59476600-59482600	Strong transcription	HMEC	breast
27	chr15:59476800-59486400	Weak transcription	Right Ventricle	heart
28	chr15:59477000-59498000	Strong transcription	GM12878-XiMat	blood
29	chr15:59477600-59485400	Weak transcription	Small Intestine	intestine
30	chr15:59477800-59486800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr15:59478000-59483000	Strong transcription	HUVEC	blood vessel
32	chr15:59478800-59483200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:59478800-59486800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:59479200-59482600	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr15:59479200-59483200	Strong transcription	Osteobl	bone
36	chr15:59479400-59482400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr15:59479400-59483000	Strong transcription	Adipose Nuclei	Adipose
38	chr15:59479400-59487800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:59479400-59488200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:59479600-59482800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr15:59479600-59483800	Strong transcription	Fetal Stomach	stomach
42	chr15:59479600-59488400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:59479800-59482400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:59479800-59482400	Strong transcription	NHLF	lung
45	chr15:59479800-59482800	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr15:59479800-59482800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr15:59479800-59483800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr15:59480000-59482600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:59480000-59482600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:59480000-59483000	Strong transcription	Aorta	Aorta

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