Variant report

Variant	rs16944090
Chromosome Location	chr18:25349754-25349755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13381176	1.00[AMR][1000 genomes]
rs16944125	1.00[AMR][1000 genomes]
rs7226425	1.00[AMR][1000 genomes]
rs7226803	1.00[AMR][1000 genomes]
rs7228063	1.00[AMR][1000 genomes]
rs7240059	1.00[AMR][1000 genomes]
rs7245263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25344200-25350600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr18:25348800-25350200	Enhancers	Dnd41	blood
3	chr18:25349400-25351200	Weak transcription	HSMM	muscle
4	chr18:25349600-25351600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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