Variant report

Variant	rs7240059
Chromosome Location	chr18:25359629-25359630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13381176	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16944090	1.00[AMR][1000 genomes]
rs16944125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7226425	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7226803	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7228063	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7245263	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1058084	chr18:25355165-25383779	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1056800	chr18:25357990-25379390	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25357800-25359800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr18:25358400-25360000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:25358600-25359800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr18:25358600-25359800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr18:25359000-25359800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:25359000-25360000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr18:25359200-25359800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:25359400-25360200	Enhancers	NH-A	brain
9	chr18:25359400-25360800	Enhancers	Osteobl	bone
10	chr18:25359600-25359800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr18:25359600-25360200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:25359600-25360200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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