Variant report
| Variant | rs16944959 |
|---|---|
| Chromosome Location | chr13:91586059-91586060 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:91584361..91586197-chr13:91588131..91590645,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10507988 | 1.00[EUR][1000 genomes] |
| rs11841091 | 1.00[EUR][1000 genomes] |
| rs11841369 | 1.00[EUR][1000 genomes] |
| rs11842059 | 1.00[EUR][1000 genomes] |
| rs1335559 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1470771 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs1470772 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1470773 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16944862 | 1.00[EUR][1000 genomes] |
| rs16944890 | 1.00[EUR][1000 genomes] |
| rs16944919 | 1.00[EUR][1000 genomes] |
| rs16944928 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs16944982 | 0.85[AFR][1000 genomes] |
| rs16952565 | 1.00[EUR][1000 genomes] |
| rs17842723 | 0.83[EUR][1000 genomes] |
| rs41275862 | 1.00[EUR][1000 genomes] |
| rs58748013 | 0.84[AFR][1000 genomes] |
| rs73599262 | 1.00[EUR][1000 genomes] |
| rs73599266 | 1.00[EUR][1000 genomes] |
| rs73599275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73599282 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73599290 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948709 | chr13:90753085-91745571 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv932206 | chr13:91370888-91878374 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042947 | chr13:91571040-92416897 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
| 4 | nsv541871 | chr13:91571040-92416897 | Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:91585200-91586200 | Enhancers | A549 | lung |
| 2 | chr13:91585200-91589800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
