Variant report

Variant	rs73599262
Chromosome Location	chr13:91571657-91571658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10507988	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11841369	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11842059	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1335559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1470771	1.00[EUR][1000 genomes]
rs1470772	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1470773	1.00[EUR][1000 genomes]
rs16944862	1.00[EUR][1000 genomes]
rs16944890	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16944919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16944928	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16944959	1.00[EUR][1000 genomes]
rs16952565	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17842723	0.83[EUR][1000 genomes]
rs41275862	1.00[EUR][1000 genomes]
rs73599266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73599275	1.00[EUR][1000 genomes]
rs73599282	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91559600-91581000	Weak transcription	Right Atrium	heart
2	chr13:91570800-91571800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:91570800-91571800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:91571000-91571800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:91571600-91572000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:91571600-91572400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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