Variant report

Variant	rs16945307
Chromosome Location	chr13:91790459-91790460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1332219	0.82[AFR][1000 genomes]
rs16945225	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945253	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945367	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945426	0.85[AFR][1000 genomes]
rs16945520	0.82[AFR][1000 genomes]
rs16945607	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9301713	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv900880	chr13:91625722-91848290	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
6	nsv900881	chr13:91704312-91829940	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
8	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
9	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91782800-91793800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:91786800-91791200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:91786800-91791600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:91787600-91792000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr13:91787600-91792000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:91787600-91795800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr13:91788600-91793200	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:91788800-91791800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:91789400-91793400	Weak transcription	Aorta	Aorta
10	chr13:91789400-91795000	Weak transcription	Fetal Kidney	kidney
11	chr13:91789800-91792800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr13:91790200-91791000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:91790200-91791800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr13:91790400-91791000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:91790400-91792600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr13:91790400-91792600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr13:91790400-91793000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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