Variant report

Variant	rs16945426
Chromosome Location	chr13:91817043-91817044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:91814597..91817770-chr13:91818942..91822512,3	K562	blood:
2	chr13:91816954..91819074-chr13:91824328..91826363,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1332219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1332220	1.00[AMR][1000 genomes]
rs13378284	1.00[AMR][1000 genomes]
rs16945279	0.85[AFR][1000 genomes]
rs16945298	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16945307	0.85[AFR][1000 genomes]
rs16945311	0.85[AFR][1000 genomes]
rs16945367	0.91[AFR][1000 genomes]
rs16945467	0.84[AFR][1000 genomes]
rs16945487	0.94[AFR][1000 genomes]
rs16945520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16945607	0.82[AFR][1000 genomes]
rs61439493	1.00[AMR][1000 genomes]
rs7989700	1.00[AMR][1000 genomes]
rs9301711	1.00[AMR][1000 genomes]
rs9301713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9583892	1.00[AMR][1000 genomes]
rs9583893	1.00[AMR][1000 genomes]
rs9583895	1.00[AMR][1000 genomes]
rs9583898	1.00[AMR][1000 genomes]
rs9589121	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs9589123	0.87[AFR][1000 genomes]
rs9589128	1.00[AMR][1000 genomes]
rs9589129	1.00[AMR][1000 genomes]
rs9589132	1.00[AMR][1000 genomes]
rs9589137	1.00[AMR][1000 genomes]
rs9589146	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9589148	1.00[AMR][1000 genomes]
rs9805288	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv900880	chr13:91625722-91848290	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
6	nsv900881	chr13:91704312-91829940	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
8	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
9	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91796800-91822600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:91805400-91821600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:91815400-91820600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr13:91816400-91817200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:91816600-91821400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:91817000-91820000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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